XLOC_020379 (rgmd)


Basic Information

Item Value
gene id XLOC_020379
gene name rgmd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19640309 ~ 19646421 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040467
AAAAAAAGTTGTGTGATTTCTCGCAGCCTCAACGCAGATGAGCAGCAGTTGGAGAACTGCAATCAAACTGAATGGATTGGCATGGGGAGAAGCGGCACTCTCAACCTGGCTAAGCGGCAGCTTTGGAACTGGTTTTATCTTGTAGTGGTTTCTATGTGCCTGTTACTCCGACCAGTGTGCTGCCAAGCATGTCGGATTCAGCGCTGTAATGCGGAGTACGTGGCCTCATTCTCACCCTCCGGTGGCTTGCAAGAGGAGGTGCATCCAGATGTGGACTACTGCATCGCTCTGAGGGCCTACTCCTTGTGTACGCGGCGTACAGCTCGTGCTTGTAGAGGGGACTTGGTGTACCATTCTGCTGTTTTCCGCATTAAAGAGCTCTTTGCACAGCACAACTGCTCCAGCGACGGCCCAACATCGTCGGCCAAAGCACCCAGCACTTCCAAGCCAACAGTGGTGGACGTTTGCAACTATGAAAGCAGGGTGCTCGCATCAGGCCCGGCGGCCCAACAGAAAAAGTATGGACATTGTGGATTATTCGGTGATCCTCACTTGCGGACTTTTCGGGATGAGTTTCAGACATGTAGGGTTGAGGGAGCCTGGCCGCTCATCCACAACAGATACCTTTCAGTTCAAGTCACAAACGTACCAGTGGTTGAAGGCTCCAGTGCTACTGCAACCAACAAGATAACCGTCATCTTCAAGTCCTACCATGACTGCACCGAGCAGAAGGTGTACCAGGCCACCACAGAGGACCTGCCGTCAGCGTTCCAGGACGGCACGCGGAGCGGGGGGAAAGGGGAGAGCTTGTGGATTGTGGAGGGTAGTGGAGGTTTGGGCATACGGCAAGTCGGGCGGTACCTGACGTTTGCCATCCGCATGCCTGAGGACTTAGCAGAGGAGAACGGCGGCCTGCAGTTGTGCCTTCACGGCTGCCCGCGCAGTGAGGTCATCAAAGCCCATGTGCTCAACCGGCAGCAGAGTTTGCGTCCACCCCGACTCATGGGGGGCTGGTACGGAGAGGACGATGGCGGAGAGGTGAAATCAGGCCTCTCTTCGCACATAGACATGCTAGAACGTGCCACCACAAAGTGTCGAGAGATGCTCCAGGTGGAGGACGTTTATTTCCAATCGTGCGTCTTTGATCTTCTCACGACAGGTGATCCGGAGTTCTCCATGGCAGCGTATGGCGCCCTGGAAGACCTTAAGGCACTTCCACCAAGCACTCTTAAACAAAGTTCACCCAGGACTCCACCTGTTTCTAATAGGGGAACAATAGTTACACCTTCGGTTTTCACAGCTCTGGTTCTTCTGCTGTTGTTGAACTGAAGGAGATGGTCTAGACACCAGCTTGACGATGGCAACAGGAAAAACAATCAAACTGGCTTTGAACTGTCAAGGGATGGATCCGAACGGACTCGCTTTCTGTTAAACACGCAATGTTTTACGCCACAAAATGGATAATGGCACTTCAAGCTTTTCTGAATGTGAAATCTGCATGAGATGAAGGCAGCTAACCTGCATATCTTTTTAAATGATCGCATATAAAGAGTGGAGACTGTTGACGCAGATGTGACACCATTGGATGAAATCATTGTAAAAGACACGTAGCATGTCCTGTGATGCACATCTTACAGAATCAcccacatacaaatatatatgtcATCTACATGGGATCCAACAACTACATAAAAAGCTACCTATGCATATATTTTTGGTTCTGGTTCCATACATCTAAAGCTACAGTCACGGTAGAAAACAACCTCTTCAAGCTGCTTATcgacagaaaacaaaacaaattctttatataataatatattgagAGAGTGTATATATGTGTTTTATATGTGTACATTCACCTGTGTATAGATGATGATGTTTTAAATGTGACATTTTGAAGCCGTTTCATCTAGTTAGatatttttgtagtttgtatAAAACATAACTAATATGTGCTGTATGGTGTAATCTGTTATTTCCCATATTAAAAATGAGTTGTTACT
>TCONS_00040468
AAAAAAAGTTGTGTGATTTCTCGCAGCCTCAACGCAGATGAGCAGCAGTTGGAGAACTGCAATCAAACTGAATGGATTGGCATGGGGAGAAGCGGCACTCTCAACCTGGCTAAGCGGCAGCTTTGGAACTGGTTTTATCTTGTAGTGGTTTCTATGTGCCTGTTACTCCGACCAGTGTGCTGCCAAGCATGTCGGATTCAGCGCTGTAATGCGGAGTACGTGGCCTCATTCTCACCCTCCGGTGGCTTGCAAGAGGAGGTGCATCCAGATGTGGACTACTGCATCGCTCTGAGGGCCTACTCCTTGTGTACGCGGCGTACAGCTCGTGCTTGTAGAGGGGACTTGGTGTACCATTCTGCTGTTTTCCGCATTAAAGAGCTCTTTGCACAGCACAACTGCTCCAGCGACGGCCCAACATCGTCGGCCAAAGCACCCAGCACTTCCAAGCCAACAGTGGTGGACGTTTGCAACTATGAAAGCAGGGTGCTCGCATCAGGCCCGGCGGCCCAACAGAAAAAGTATGGACATTGTGGATTATTCGGTGATCCTCACTTGCGGACTTTTCGGGATGAGTTTCAGACATGTAGGGTTGAGGGAGCCTGGCCGCTCATCCACAACAGATACCTTTCAGTTCAAGTCACAAACGTACCAGTGGTTGAAGGCTCCAGTGCTACTGCAACCAACAAGATAACCGTCATCTTCAAGTCCTACCATGACTGCACCGAGCAGAAGGTGTACCAGGCCACCACAGAGGACCTGCCGTCAGCGTTCCAGGACGGCACGCGGAGCGGGGGGAAAGGGGAGAGCTTGTGGATTGTGGAGGGTAGTGGAGGTTTGGGCATACGGCAAGTTAAGATCCACGCTCGCTATCTGGGCACCTCCATCATCGTGAGGCAAGTCGGGCGGTACCTGACGTTTGCCATCCGCATGCCTGAGGACTTAGCAGAGGAGAACGGCGGCCTGCAGTTGTGCCTTCACGGCTGCCCGCGCAGTGAGGTCATCAAAGCCCATGTGCTCAACCGGCAGCAGAGTTTGCGTCCACCCCGACTCATGGGGGGCTGGTACGGAGAGGACGATGGCGGAGAGGTGAAATCAGGCCTCTCTTCGCACATAGACATGCTAGAACGTGCCACCACAAAGTGTCGAGAGATGCTCCAGGTGGAGGACGTTTATTTCCAATCGTGCGTCTTTGATCTTCTCACGACAGGTGATCCGGAGTTCTCCATGGCAGCGTATGGCGCCCTGGAAGACCTTAAGGCACTTCCACCAAGCACTCTTAAACAAAGTTCACCCAGGACTCCACCTGTTTCTAATAGGGGAACAATAGTTACACCTTCGGTTTTCACAGCTCTGGTTCTTCTGCTGTTGTTGAACTGAAGGAGATGGTCTAGACACCAGCTTGACGATGGCAACAGGAAAAACAATCAAACTGGCTTTGAACTGTCAAGGGATGGATCCGAACGGACTCGCTTTCTGTTAAACACGCAATGTTTTACGCCACAAAATGGATAATGGCACTTCAAGCTTTTCTGAATGTGAAATCTGCATGAGATGAAGGCAGCTAACCTGCATATCTTTTTAAATGATCGCATATAAAGAGTGGAGACTGTTGACGCAGATGTGACACCATTGGATGAAATCATTGTAAAAGACACGTAGCATGTCCTGTGATGCACATCTTACAGAATCAcccacatacaaatatatatgtcATCTACATGGGATCCAACAACTACATAAAAAGCTACCTATGCATATATTTTTGGTTCTGGTTCCATACATCTAAAGCTACAGTCACGGTAGAAAACAACCTCTTCAAGCTGCTTATcgacagaaaacaaaacaaattctttatataataatatattgagAGAGTGTATATATGTGTTTTATATGTGTACATTCACCTGTGTATAGATGATGATGTTTTAAATGTGACATTTTGAAGCCGTTTCATCTAGTTAGatatttttgtagtttgtatAAAACATAACTAATATGTGCTGTATGGTGTAATCTGTTATTTCCCATATTAAAAATGAGTTGTTACTA

Function

symbol description
rgmd Predicted to enable coreceptor activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; central nervous system; musculature system; and pharyngeal arch.

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0015026 coreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-561 Predicted to enable coreceptor activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; central nervous system; musculature system; and pharyngeal arch.

Ensembl:

ensembl_id ENSDARG00000034013

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040467 False 2003 mRNA 0.48 4 19640309 19646420
TCONS_00040468 True 2052 mRNA 0.48 3 19640309 19646421

Neighbor

gene id symbol gene type direction distance location
XLOC_020378 hsd11b1la coding upstream 77854 19552987 ~ 19562455 (+)
XLOC_020377 BX936298.3 coding upstream 96504 19538626 ~ 19543805 (+)
XLOC_020376 si:dkey-78l4.13 coding upstream 109628 19522982 ~ 19530681 (+)
XLOC_020375 si:dkey-78l4.12 coding upstream 121520 19517610 ~ 19518789 (+)
XLOC_020374 si:dkey-78l4.10 coding upstream 143802 19494996 ~ 19496507 (+)
XLOC_020380 BX510913.2 coding downstream 125277 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 coding downstream 146698 19793119 ~ 19793233 (+)
XLOC_020382 NA coding downstream 192854 19839275 ~ 19839592 (+)
XLOC_020383 NA coding downstream 365375 20011796 ~ 20050276 (+)
XLOC_020384 eef2a.1 coding downstream 489022 20135443 ~ 20143425 (+)
XLOC_020360 BX927243.1 non-coding upstream 402083 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 1044051 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1336021 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1348512 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1815736 17824459 ~ 17824573 (+)
XLOC_020385 BX005203.1 non-coding downstream 493104 20139525 ~ 20139592 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03253246_03261669 RGMD coding CI01000030 null 3253246 ~ 3261943 (+)
bowfin (Amia calva) AMCG00005884 rgma,LOC103371300 coding CM030142.1 CM030142.1 11838001 ~ 11863038 (-)