XLOC_020384 (eef2a.1)


Basic Information

Item Value
gene id XLOC_020384
gene name eef2a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20135443 ~ 20143425 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040471
TCACTGTTAAACGAATCCAAAAACATCAGGCAAAATGGAGAACTTCAATGTAGACCAGATCCGTGCCACCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTAATAGGAGCTTTTGATCATGGCAAATCAACTTTGACCGATTGGCTGGTGTCAGAAGCCGGTATCGTCAGCTCAGCCCGTGCTGGAGAAACCCGTTTCATGGATACGAGGCGTGATGAACAAGAGCGTTGCATCACCATCAAGTCAACGGCCATCTCCATATTCTATGAGCTTGCTGAAAAGGATTTGGCTTTCATTAAAGAGTGCAAAGATGGCTCCGGCTTCCTCCTCAACCTGATTGACTCCCCTGGGCATGTTGACTTTTCTTCAGAAGTTACAGCTGCACTGCGTATCACAGATGGAGCATTGCTGGTGGTGGATTGTGTGTCTGGTGTGTGCTTACAGACAGAGACTGTGCTCAGACAGGCCATTGGTGAGAGGATTAAACCAGTTTTGATGATTAACAAAATGGATCGAGCTTTGCTCGAGCTACAGTTGGTCCCTGAAGAGCTGTACCAGATCTTTCAGCGCATTGTTGAGAAAGTCAACGTGACCATCTCCACCTATGCTGAGGATGAGAAAGGCCCTATGGGCAATGTCATGATTGATCCTGTCATTGGTAATCTTGCCTTTGGATCTGGACTGCATGGATGGGCCTTCACTTTGAAGCAGTTTGCTGAGCTCTATGTGAAAAAGTTCGCTGGTAAAGCTCAGCTGGGACCGGAAGAGTACATCAAGAAGGTGGAGGACATGATAAAGAGACTTTGGGGCGACAGCTACTTTGACTCTACTACTGGCAAGTTCAGCGAGTCTGCGACATCGCCAGATGGCAAGAAGCTTCCCAGGACTTTTGTTCACTTAGTCCTGGACCCCATCTTCAAAGTATTTGATGCCATCATGAACTTCAAAAAGGAGGAAACTGTAAAGCTGATTGAGAAGATGGGCATCAAGCTAGATGTGGAGGACAAGGAGAAGGAGGGCAAAATCCTACTGAAGGCTGTGATGCGTTGCTGGCTCCCGGCTGGAGAGGCTCTGCTTCAGATGATCACCATCCACCTGCCCTCACCGGTTACTGCTCAGATTTACCGCTGTGAGCTGCTGTATGAAGGACCTGGAGATGATGAGGCTGCCATGGGCATCAAGAATTGTGATCCTAAAGCACCTCTCATGATGTACATTTCTAAAATGATACCAACATCTGACAAAGGTTGTTTTTATGCGTTTGGTCGCGTCTTCTCTGGCTGTGTCTCCACTGGCCTGAATGTGCGCATTATGGGGCCCAACTTCACCCCTGGAAAAAAGGATGATCTTTACCTGAAACCCATCCAaaggACCGTTCTAATGATGGGTCGCTACGTTGAACCCATTGAAGATGTGCCCTGCGGCAATATTGTAGGTCTGTTAGGGGTGGATCAGTTTTTGGTAAAGACTGGAACCATCACTACTTTCACAAAAGCCTACAATATGCGTGTGATGAAGTTTAGTGTCAGTCCTGTGGTGAGAGTGTCCGTGGAGGTCATGGACCCTGCTGACCTTCCTAAACTGGTGGAGGGATTGAAGCATCTGGCCAAGTCAGATCCCATGTTGCAATGCATCATTGAGGATACTGGTGAACATATCATTGCTGGAGCTGGTGAGCTTCACTTGGAGATTTGCCTTAAGGATCTTGAAGAGGACCATGCCTGCATTCCCCTCAAGAAATCAGATCCATTTGCTTCCTACAGAGAGACGGTCAGTGATGGCTCCAAACAATTGTGCCTTGCCAAGACGCCAAACAAGCACAGTCGTCTCTTCATGAAGGCCTGTCCTCTGGCTGATGGTCTTGCAGAAGATATTGATAAGGGTCGGGTCACTGCCAGCCAGGAGATGAATGCCCGTGCCCAATACCTTGCTGAAAACTATAAGTGGGAAGTGACTGAAGCTCGTAAGATCTGGTGCTTTGGCCCTGAGGGAACTGGACCCAACATCTTGGTAGATTTGACCAAGAGAGTGCAATACTTGAATGAGATTAAGGACAGTGTGATTGCTGGATTTCAGTGGGCCACTAGAGAGGGAGTCTTGTGCGCAGAGAACATGCGTGGCATTCGCTTTGACATTCATGATGCAACTTTGACTTCTACTGCCATTCACCGTGGTCCAGGTCAAATAATTGTTGCAACCCGCCGAGTGCTTTATGGCTGTCAGCTCACAGCTGAACCAAGGCTTAGTGAGCCGATATACCTGGTGGAGATGCAGTGCCCAGAGTCGGTTATTGGTAACGTCTATGGTGAACTGGTCAGGAGGCGTGGAGTAGTGTTTTCAGAGTCCCAGGTTATGGGAACTCCTGTTTATTTGCTCAAGGCTTACTTGCCTGTCAGCGAGTCATTTGgttttacagcTGACCTTTGTGCCAACACATCTGGCCAAGCCTTCTCACAGTGTGTGTTTGATCATTGGCAGATATTGCCTGGAGACCCAATGGATCCTACCTCCAAAGTTGCTCATATTATGGCTGATATACGAAAGAGCAAGGGCCTTGATGAAGCCATTCCAGCATTACATTGCTACTTGGACTAATTGTAGGTTTACATAAGGTTTACAATCTGCACAGACTTTAAATCTTGTATTTAAGCACTTAAACCTTTATAAGTCTGACCAACCTATAACTACCATAAGAAAGAAAATGCCACTTATTAGAGAAATGCTTCAGATGTGCTAAACACCTTCCTAATACTGGCAGGTTCTCTGAAAAGTTTAATTCCTCTTATGTCAAACCTATAATTCAATTTGCACATGTATGAAAAATGGCAAGAGATTAACCTGAGCATTAACGAAAGGCACTTTCTGAAATTAATTTAGACCAGGCATGACCAAACTGTATATACTTAATGCTAAATGGGTCCCCATTTTGATAGATTGTGAAATTTTAAACTCAACTAGATGAAGATTTTATACTAAGAgcactttttattttcatttaaatgccTTTTCAAGAAGAATTAACGTATCATATATTGAACTgagaaattatattaaataaaacaacactaaATTAAAATGTTGATCTTGCCATTAAATAGCCAGGAGTTGCTGATGTGGCAGTAAACAAACTTGAAGGTTTACTCCTACTTCATAACTAATGACTTGTTTTCTGCCTTACGAAGGCACCTATTATCAGGGTTTCCCACTCTTTCATGAACGGCAATTTCAAGGAatttttaaagcaccattaattttaaatcaaacatCATTAAACTTCCTCAGCTTATGTAGCACCTTAAGTTCTTACTGTACTTTAACATTTcccttacacttaatatttaaaagtatCAGAGTAATGATAAACAGTCTTGTTCAAACAACTTTAATACAATTTGTTGAATTTAACACTGGTAATATTCAACTATGGTCTGAATTTCCCAGTTTTTGTTCAGTTTCTGAAAGCAGAACTGTACAGTTGTTGAAATAACTCCAGAAATTCAAGCACTTTTAAGAGCCTACATTTGTTTGTAGATAGGCTGGAATTCATATGTATTTAAGAAGCATGGGGACCTTGTATTATGGAGCAACAGGCTAATGATGGGATTTCTCAATTCCTAGTGTAAGTTTGTGATTTGTGCTGAAACTTAATGTAATGAATTGGAGAAGGTACTGTTGGAATATGCATGTACTGAGTATGAATTGATATTTTGTAATTACTGTAATTGTTAAATGTTAGAAGTCAACCTCCATGTTAATGCAATACTGAAAGTCTCATTTTTTTGAACtctgcaaaaataaaatgtaaaacctgtttgatcagc
>TCONS_00040473
AACATGCGTGGCATTCGCTTTGACATTCATGATGCAACTTTGACTTCTACTGCCATTCACCGTGGTCCAGGTCAAATAATTGTTGCAACCCGCCGAGTGCTTTATGGCTGTCAGCTCACAGCTGAACCAAGGCTTAGTGAGCCGATATACCTGGTGGAGATGCAGTGCCCAGAGTCGGTTATTGGTAACGTCTATGGTGAACTGGTCAGGAGGCGTGGAGTAGTGTTTTCAGAGTCCCAGGTTATGGGAACTCCTGTTTATTTGCTCAAGGCTTACTTGCCTGTCAGCGAGTCATTTGgttttacagcTGACCTTTGTGCCAACACATCTGGCCAAGCCTTCTCACAGTGTGTGTTTGATCATTGGCAGATATTGCCTGGAGACCCAATGGATCCTACCTCCAAAGTTGCTCATATTATGGCTGATATACGAAAGAGCAAGGGCCTTGATGAAGCCATTCCAGCATTACATTGCTACTTGGACTAATTGTAG

Function

symbol description
eef2a.1 Predicted to enable GTPase activity; ribosome binding activity; and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within translation. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in glaucoma and spinocerebellar ataxia type 26. Orthologous to human EEF2 (eukaryotic translation elongation factor 2).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0003924 GTPase activity molecular_function
GO:0043022 ribosome binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-500 Predicted to enable GTPase activity; ribosome binding activity; and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within translation. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in glaucoma and spinocerebellar ataxia type 26. Orthologous to human EEF2 (eukaryotic translation elongation factor 2).

Ensembl:

ensembl_id ENSDARG00000042094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040471 False 3825 mRNA 0.43 13 20135443 20143425
TCONS_00040473 True 492 mRNA 0.47 3 20141528 20142205

Neighbor

gene id symbol gene type direction distance location
XLOC_020383 NA coding upstream 85167 20011796 ~ 20050276 (+)
XLOC_020382 NA coding upstream 295851 19839275 ~ 19839592 (+)
XLOC_020381 BX510913.3 coding upstream 342210 19793119 ~ 19793233 (+)
XLOC_020380 BX510913.2 coding upstream 363631 19771698 ~ 19771812 (+)
XLOC_020379 rgmd coding upstream 489022 19640309 ~ 19646421 (+)
XLOC_020386 eef2a.2 coding downstream 1611 20145036 ~ 20155026 (+)
XLOC_020387 BX005203.2 coding downstream 8500 20151925 ~ 20151981 (+)
XLOC_020388 hmg20b coding downstream 25927 20169352 ~ 20181597 (+)
XLOC_020389 unc13a coding downstream 51855 20195280 ~ 20241232 (+)
XLOC_020390 NA coding downstream 103047 20246472 ~ 20247476 (+)
XLOC_020360 BX927243.1 non-coding upstream 897217 19237031 ~ 19238226 (+)
XLOC_020391 NA non-coding downstream 104484 20247909 ~ 20259347 (+)
XLOC_020392 NA non-coding downstream 117806 20261231 ~ 20265527 (+)
XLOC_020393 NA non-coding downstream 169378 20312803 ~ 20332834 (+)

Expression


Co-expression Network