XLOC_020388 (hmg20b)


Basic Information

Item Value
gene id XLOC_020388
gene name hmg20b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20169352 ~ 20181597 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040476
ACCAATCAAACTCACCAAGGATCTGTCAATCAAACCAACATTTGTCCCTAAGCTAGCGTATGACTTAAAACAAAACAGGCACCAATTTAGAATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCTCAGCAGACTGATTCGCCACAGGAAGAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAgcgttACCTTGATGAAGCCGAAAGGGACAAAATGCAGTATGCACGAGAACTCAGGGAGTATCAGAAAAGCGAAGCTTATCAGATCACGTGTGCAAAAGTTCAAGACAAGAGAATCAAAagagAAGAGTTGACTTCTGTCATTATCAACGCCAACAGTTCAGGATCTTCAGGTTTTAAGAACTCAGACTTCACGGCCAGATTTGATGTCCCTATTTTCACAGAAGAATTTTTGGACCAAAACAAAGCAAGAGAAGCAGAGCTCCGGCGTTTGCGCAAGGCTAATGTGGAGTTCGAGGAGCAGAATGCTGTTCTCCAGAAACACATTGCCGACATGTTCAGTGCTAAAGAGCGCCTGGAAGCTGAGCTAGGCCAAGATGAGCTTCGTACGCAGGCCCTACAGCGCCACCTACAGGCTATCAAACAGACGCTAGTCAGCAGCTTGGCTACTGTGCCTTTACCAGgcACTGGTGAAACGCCGTCGATTGGGACGCTGGACTCATACCTGAGTCGCCTGAGCAGTGCTTTAGAGAGCAGGCCTCATGAGCATCGTGCCTTAGTCCTTAAGCTACAAGAGCTCTTAGCTCACCTGGACAGGTAGATAATGTGGTACTATGTGCCATAAAACACAAATATCAAATGAGTCAATAAAATGTATCTTATCTCTGTG
>TCONS_00040477
AAACTCACCAAGGATCTGTCAATCAAACCAACATTTGTCCCTAAGCTAGCGTATGACTTAAAACAAAACAGGCACCAATTTAGAATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCTCAGCAGACTGATTCGCCACAGGAAGAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAgcgttACCTTGATGAAGCCGAAAGGGACAAAATGCAGTATGCACGAGAACTCAGGGAGTATCAGAAAAGCGAAGCTTATCAGATCACGTGTGCAAAAGTTCAAGACAAGAGAATCAAAagagAAGAGTTGACTTCTGTCATTATCAACGCCAACAGTTCAGGATCTTCAGGTTTTAAGAACTCAGACTTCACGGCCAGATTTGATGTCCCTATTTTCACAGAAGAATTTTTGGACCAAAACAAAGCAAGAGAAGCAGAGCTCCGGCGTTTGCGCAAGGCTAATGTGGAGTTCGAGGAGCAGAATGCTGTTCTCCAGAAACACATTGCCGACATGTTCAGTGCTAAAGAGCGCCTGGAAGCTGAGCTAGGCCAAGATGAGCTTCGTACGCAGGCCCTACAGCGCCACCTACAGGCTATCAAACAGACGCTAGTCAGCAGCTTGGCTACTGTGCCTTTACCAGgcACTGGTGAAACGCCGTCGATTGGGACGCTGGACTCATACCTGAGTCGCCTGAGCAGTGCTTTAGAGAGCAGGCCTCATGAGCATCGTGCCTTAGTCCTTAAGCTACAAGAGCTCTTAGCTCACCTGGACAGTGAGAAGCTTTGAATGGTGGGATCTAAAGGTTCTTCATCCGGCTGACCAAAAGCATTCAGAAGGCTTGGGACCCCAGTGCTCTGCCTCAAATGCCAATAACAAGAGCCAAACGGTTTAATTGGGTATTTTCAGAAGGCTTGCTCTGCAATAAGCTCGTTTCACTGGTAACACTGGTGCTGACTGATTCTAAACTTATTGTCATTAATTTTTATAATGCTGTTTTGACAGTTACAGCAGCTCATGGGAAGTCCATTTACATCCACTGAAAGCATGGTTTAAGGATAATGATGTTTGCTaggataatgtaatgtaatgcaaagTGCATTTACTATTCTTTGTCATAATATTTTCTGAATTTAAATGTATGGTTATTTTTGGTCACGTTCCCATTTGAACAGTTGGCATTGCAAAGGGTGATGAATTTAGAGTCAAGAGTTTACACTGCTTTGCTCGTGTACTTGaactgatttttattattattattgtatgaatTATTTTAACATGGAAAGAGAATATGAAGtggaaaaaatgataataaaacccAGCATGAACTAGTCTA
>TCONS_00040478
AATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCTCAGCAGACTGATTCGCCACAGGAAGAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAgcgttACCTTGATGAAGCCGAAAGGGACAAAATGCAGTATGCACGAGAACTCAGGGAGTATCAGAAAAGCGAAGCTTATCAGATCACGTGTGCAAAAGTTCAAGACAAGAGAATCAAAagagAAGAGTTGACTTCTGTCATTATCAACGCCAACAGTTCAGGATCTTCAGGTTTTAAGAACTCAGACTTCACGGCCAGATTTGATGTCCCTATTTTCACAGAAGAATTTTTGGACCAAAACAAAGCAAGAGAAGCAGAGCTCCGGCGTTTGCGCAAGGCTAATGTGGAGTTCGAGGAGCAGAATGCTGTTCTCCAGAAACACATTGCCGACATGTTCAGTGCTAAAGAGCGCCTGGAAGCTGAGCTAGGCCAAGATGAGCTTCGTACGCAGGCCCTACAGCGCCACCTACAGGCTATCAAACAGACGCTAGTCAGCAGCTTGGCTACTGTGCCTTTACCAGgcACTGGTGAAACGCCGTCGATTGGGACGCTGGACTCATACCTGAGTCGCCTGAGCAGTGCTTTAGAGAGCAGGCCTCATGAGCATCGTGCCTTAGTCCTTAAGCTACAAGAGCTCTTAGCTCACCTGGACAGTGAGAAGCTTTGAATGGTGGGATCTAAAGGTTCTTCATCCGGCTGACCAAAAGCATTCAGAAGGCTTGGGACCCCAGTGCTCTGCCTCAAATGCCAATAACAAGAGCCAAACGGTTTAATTGGGTATTTTCAGAAGGCTTGCTCTGCAATAAGCTCGTTTCACTGGTAACACTGGTGCTGACTGATTCTAAACTTATTGTCATTAATTTTTATAATGCTGTTTTGACAGTTACAGCAGCTCATGGGAAGTCCATTTACATCCACTGAAAGCATGGTTTAAGGATAATGATGTTTGCTaggataatgtaatgtaatgcaaagTGCATTTACTATTCTTTGTCATAATATTTTCTGAATTTAAATGTATGGTTATTTTTGGTCACGTTCCCATTTGAACAGTTGGCATTGCAAAGGGTGATGAATTTAGAGTCAAGAGTTTACACTGCTTTGCTCGTGTACTTGaactgatttttattattattattgtatgaatTATTTTAACATGGAAAGAGAATATGAAGtggaaaaaatgataataaaacccAGCATGAACTAGTCTACTTTCTTTTAAACGATTTCATTATTGAGCTGTCTAGCTCACTGTATCCAGCAGAGGGTGACACTGACCACATCATGAAAGCCAATAGTCTGAAAAATAATCATCCTTTATCTTTTGAAATTACATTGTTAGAATATCATAACTAAATTTAGATCgaccaaaaaaatttaattattagtcagaattattagcctccctgaaatATTagtctccctgtttattttttttccccaatttctttttaacagagcagattttatcaacacatttctaaatataatagtgttaataactcatttctaataactgttttattttatcctgtcatgatgacagtaaataatatttgactagttatttttcaagacacttctatacagcttaaagtgacatttaaaggctttactattTGAaattgtccttgctctgttaaacataatttgggagatatttgaaaaagaagaaaaaattcaaggggggctaaaaattctgacttcgacCGTATGTACTAATTACTATTATCATCAAAGAGAAATGCCATATCTTACTGAATGCAGCTAAAATGTGTAAATTAaggttaaatgattaataaatcggTAGTCTTTACTTTTGGGTTAGAAGCCATATTGAATTTAACATGAATGAAAATGAGTCTGTGAAGGTAAAATTTAGGCCAGttcacaactttaaaatgatAGCTATAACAACAGTGATGATTATATTGACATCCAGTTTGGAGACCTATTTTATTCCTCTgatatacactcaacggccagtttattaggtacaccttacaagtattAGGTCGGACACCCTATTGCCTTCAAAACTCCCTTAATCCTTtgtgcatagattcaacaaggtactggaaatattcctcagagattttggtccatattgccaTGATAACATctggcagttgctgcagatttgccagatgtttattccaagatgtgaatctcccattccaccacatcccaaaggtgctctattggattgagatctggtgactgtggaggccatttgagtacagtgaactcaaacGACCTCAATttttgatgtgttgtgcgttcagatgctcttctacataccttggttatttgagtaactgctgcctcgaaccagtctggccattgtccTCTAACCTCTGTCATCaacagaactgcctctcactggatattttctctttttctgatcattctctgtagaccctagagatggttgtgcatgaaaatcccagtagatcagcaatttctgaaatactcagaccagcccgtctgacaccaacaaccattatgccacgttcaaagtcacttaaatcacctttcttcgccattctgatgctcggtttgaactgcagcagatcgtcttgaccatgtctacctgcctaaatgcattaagttactgccatgtgattggatgattagaaatttgcattaacgagtagttggacaggtgaacctaatatagtggccggtgagtgtagctGTGGTGTGAAgtggtgttttttatattttgattgattttttttttaaagctgtatttttataattattttatatggtATGGATGAGCCTTTGGGTTTACATTGGCTTACACTTTATTTATATAATCAACAGTTGATTTTGTTAAACAACAGAACACTCCACTGAATTCAATGAACTATTGTCACATACAACAGATACATATACAGtcaaaatgaacattattaagacATCTTCAACCTTTCTCACATTGCTTTTGCCATAATTTAGAAACATGATCGAATATGATATAAAGTAGGTCAGATAAATTTGAGAGAAAGGTACAGTATGTTCTGAATTACTATGAACCAAGAATAATTCAGACAgcatttactataatatttaccCAATTATCAATACTTTGTTGTCAACCTTTAGTCTCAATGACAGCCCGCAGTCTCTGCTGTCCAACCTTATGAATATTTTTAGGGTATTATATGTCAGTTTACTTTATTAGCTATACTTATAAATCACCTGCACTGTCCTGCACCCCTTATCTAAAAAGTCTAATTATATGTGGTGTTTGAATAATTTAAGGTTTGTACATAAATCCTGTTACACTGGGCCATAATAATTCAGTGACGGAGAATGCATAATGGACAACATTGTGAGTGCCTTTCACAACCTCACATTAATCCTTGACGTCCATTGACTTTCTGTCAGAGTTGAGCAGCAGTCATTCACTGTTAGCAGAtaccattaaaataaatgagAAGTGCCTTATGCTGTTTCTTACCTGTCACAAAATTGTCTGTAACATCACTAATAGAGCAGTATTTTTCCCCATCAGAACTAGATCAATTTAAAAGTCATGTTTAAgggcaaaaacaacaaatattcTTAACATACCAGCCAAACTTGTgttattttacttgtatttttggCTTAAGGTTGCAGGTTTGCCTTTCATAGACTGTAAGCCGTCTTCAATATTGCAACAGTTAAAGCTGGTCCATGAGCACTTGAAATAAATTGACCGCAACCAACATTATATGCATATCTATATCTAAAAGATGTTGATGGAATTTTTCGTAACTaacataatacaaataagacaaaGGCCTCAGTCACCATTCACTTTCTCAGCttctttttctaaaataaaatggaGAATAAAGCAGATATTCTCTCATTATAGAGAATGGGAATCTGTCGTGATGTGTTTTCAGACACGTTCAGGAGTGCACAATGTAAACTGATGCAAATTATGACAGAAAAAGCTGactgtttcatttttaaaaccttttgaaAACCACCTTACAaatcctttaaataaaatataaatggacCAATGTGTAAATACCTTCATAAACACACATTGTGAAGTTGAAAATATGCATTACCTTAAATTCTGTCCCCAGCCAAAACATTCACTAACATTCGTGGGCCTCTCAATGAGCTactgcaggggttctcaaactttttaaaaagcctGATGGATTTGTTTttgcatgttgttattgttataaatattaagttgaccatttcaatgtggtcatgtcattggcccatgaacatttcctgcttgttatcaaactattccataactgtaacaagagacaattaaatcataacctaatgttaaaacagctatcataacattatttatcaatatgtgaagagttcagatgcaaaaacctctaaatgccatctttttt

Function

symbol description
hmg20b Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20B (high mobility group 20B).

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-4258 Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20B (high mobility group 20B).

Ensembl:

ensembl_id ENSDARG00000042045

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040476 False 1075 mRNA 0.47 8 20169352 20176716
TCONS_00040477 False 1555 mRNA 0.44 9 20169359 20178417
TCONS_00040478 True 4652 mRNA 0.37 8 20172018 20181597

Neighbor

gene id symbol gene type direction distance location
XLOC_020386 eef2a.2 coding upstream 14326 20145036 ~ 20155026 (+)
XLOC_020387 BX005203.2 coding upstream 17371 20151925 ~ 20151981 (+)
XLOC_020384 eef2a.1 coding upstream 25927 20135443 ~ 20143425 (+)
XLOC_020385 BX005203.1 coding upstream 29760 20139525 ~ 20139592 (+)
XLOC_020383 NA coding upstream 119076 20011796 ~ 20050276 (+)
XLOC_020389 unc13a coding downstream 13683 20195280 ~ 20241232 (+)
XLOC_020390 NA coding downstream 64875 20246472 ~ 20247476 (+)
XLOC_020391 NA coding downstream 66312 20247909 ~ 20259347 (+)
XLOC_020392 NA coding downstream 79634 20261231 ~ 20265527 (+)
XLOC_020393 NA coding downstream 131206 20312803 ~ 20332834 (+)
XLOC_020382 NA non-coding upstream 329760 19839275 ~ 19839592 (+)
XLOC_020381 BX510913.3 non-coding upstream 376119 19793119 ~ 19793233 (+)
XLOC_020395 NA non-coding downstream 251973 20433570 ~ 20434017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03580764_03584676 HMG20B coding CI01000030 null 3580764 ~ 3585255 (+)