XLOC_020390



Basic Information


Item Value
gene id XLOC_020390
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20246472 ~ 20247476 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042131
ATAAGATCCCAACACAACATATAAGAAATGCTGGAATAACAAGTAAAAGTGCCTTTCCTGATTGATCAAAGCAGAaagacatgtgtgtgtgtgcggtgtagGAGCAGTGTGTTCAGACTCTGCGCAGGAAGTTGATCTTGAGGGCCTCAGGGATCTGCATCTGCTCTGCGGTGACCTGCGCTGGAGGATCATGAGGGAAGGTGACAGGAAACACACGCCGGACGTCCAGCAGCAGCTGAGGAGGACCTTCCGAGCGGCCCTTCAGCAGAGCCTgtaaaggaggaagaagaagagtgTTCTCCATCAGCTCTGAACAACAATTGAACACCTTTCTACAGTCCGACTCTTCCTCTCACCTGAACCAGACGGATGAAGTTGAGCGTCACTCGCTCCTCCAGATCACTCTGAGGAGCTGTGCGGCCTGTATCAGCGGCTCCAGAGTCCCCACAGCGCCTCCTGTCTGAAGAGAACGAGCCCGCAGCCACTCCTCCAGCACGCTCACATTATACCTGCAGCATATCAGACCAACAAACACTCCATTTCTATCATAATGCACCGTACAGCATCAGCCTTTTCTGAAATGGTGTTTAAGGATTTTTGCCTTTTTAAACTTCCTGAGAGTCtgatctgctctgattggtcagattttgtG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042131 True 652 lncRNA 0.50 2 20246472 20247476

Neighbor


gene id symbol gene type direction distance location
XLOC_020389 unc13a coding upstream 5240 20195280 ~ 20241232 (+)
XLOC_020388 hmg20b coding upstream 64875 20169352 ~ 20181597 (+)
XLOC_020386 eef2a.2 coding upstream 91446 20145036 ~ 20155026 (+)
XLOC_020387 BX005203.2 coding upstream 94491 20151925 ~ 20151981 (+)
XLOC_020384 eef2a.1 coding upstream 103047 20135443 ~ 20143425 (+)
XLOC_020391 NA coding downstream 433 20247909 ~ 20259347 (+)
XLOC_020392 NA coding downstream 13755 20261231 ~ 20265527 (+)
XLOC_020393 NA coding downstream 65327 20312803 ~ 20332834 (+)
XLOC_020394 foxq2 coding downstream 179694 20427170 ~ 20429374 (+)
XLOC_020395 NA coding downstream 186094 20433570 ~ 20434017 (+)
XLOC_020385 BX005203.1 non-coding upstream 106880 20139525 ~ 20139592 (+)
XLOC_020383 NA non-coding upstream 196196 20011796 ~ 20050276 (+)
XLOC_020382 NA non-coding upstream 406880 19839275 ~ 19839592 (+)
XLOC_020381 BX510913.3 non-coding upstream 453239 19793119 ~ 19793233 (+)
XLOC_020399 NA non-coding downstream 324358 20571834 ~ 20573960 (+)

Expression



Co-expression Network