XLOC_020391


Basic Information

Item Value
gene id XLOC_020391
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20247909 ~ 20259347 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042132
cactgtggtcataaagggatgttgttggtactaatgggcccaaagtgtgccaagaaaatatcccccacaccattacaccaccaccaacagcctaaaacattgatacaaggcaggattggttcatgcttttatgtcattgtggcacctggtgtggttttctgctgctgtagcccatccgcctcaaggttacacgtgttgtgcattaagagatgctcttctgcagaccttcggttgtaacaagtggtaatttgagttactgttgcctttctgtcagctggaaccagtttagccattctcctctgacctctggcatcaacaaagcgtttgtgcccacagaactgccactcactggatattttctctttttcgggcCATTGTCTATTCCTATTGATGGAttgagatcagcagtttctgaaatactcagaccagcctgacTGAGACCATcagccatgccatgttcaaagtcacttaaatcacctttctttaccattctgatgctcggtttctacagcagatcgtcttgaccatgtctacatgcctaaatggattgagtcgctgccatgtgattggctgattagaaatttgcgttaacgagcagttggacaggtttacctaataaagtggccagttagtatataagtgaattgggtagcaATGTTGTCTCTCGAAATTATAGTAACGCAGCATAAtgtccatcagccaatcagaataaagcATTAAAGAGCCCTGTAGTATAAAAAAGGTAAGTTTGGACACTGTGAATACTATGTGAAGAGCGCGGCGTATAGCACAAACCGGATCTGCAGGCCTCGGCTCCAGCAGCACATGTCCTTGCGCAGCAGCAGACTGTTGAGGGTGGATGCGGACAGCAGGTACACGAGCTGGTGAAAGGCCTGTTCCTGCAGGACGGAGGGCAGGTGTTGACGGGACAAGGCCGTGTGAAGGGCCGAAAGCTCCCGCAGGACTGAGGACATACTGACTCCTTCTGAACCGCCTGGAGGACGCGGATCTGAACCGGCCCGCTTACGAGCAGCGCTCAGCTTTACTGAGGATCCAGCCAGACCAGGAATCATCTCACTCTCCAGCATCGCCGGGACTGCATGGGTGCACAAACTTACATGGCAGTTTTAATGCCGCTCACAACAGCACTGCAAAGTCCCTTGACCCGTGCCTGATCTCCGCTGCAGTCCACCTGacgcacacacagaaacaaaaccCGAGCCACTAGTCCAGGAGATGAAGACAAGACGCTCTCTGCTCGCACGTCTGCCACAGAAACGCATTCATTCCTGTCAGTCAGCCAGCATTCATAAATAAATCCAGCTGTTGTGAGTGCCGTTTACCTGTTATGAGGTGTTTGATCAGTTTGCTCTCATCTTTTTTCCTGCACTCCAGCAGTCCAGTGATCGTCTGGTTCCGCTGAGGAGAAGGAGATGTTGGGTCCTGAGACTCGGCCACGACTAGACCTGAGAGTGATCCAAAACATACAGTCATGGAAAAAAAT

Function

GO:

id name namespace
GO:0006323 DNA packaging biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042132 True 1504 lncRNA 0.49 2 20247909 20259347

Neighbor

gene id symbol gene type direction distance location
XLOC_020390 NA coding upstream 433 20246472 ~ 20247476 (+)
XLOC_020389 unc13a coding upstream 6677 20195280 ~ 20241232 (+)
XLOC_020388 hmg20b coding upstream 66312 20169352 ~ 20181597 (+)
XLOC_020386 eef2a.2 coding upstream 92883 20145036 ~ 20155026 (+)
XLOC_020387 BX005203.2 coding upstream 95928 20151925 ~ 20151981 (+)
XLOC_020392 NA coding downstream 1884 20261231 ~ 20265527 (+)
XLOC_020393 NA coding downstream 53456 20312803 ~ 20332834 (+)
XLOC_020394 foxq2 coding downstream 167823 20427170 ~ 20429374 (+)
XLOC_020395 NA coding downstream 174223 20433570 ~ 20434017 (+)
XLOC_020396 onecut3a coding downstream 202141 20461488 ~ 20473567 (+)
XLOC_020385 BX005203.1 non-coding upstream 108317 20139525 ~ 20139592 (+)
XLOC_020383 NA non-coding upstream 197633 20011796 ~ 20050276 (+)
XLOC_020382 NA non-coding upstream 408317 19839275 ~ 19839592 (+)
XLOC_020399 NA non-coding downstream 312487 20571834 ~ 20573960 (+)
XLOC_020402 CU693455.2 non-coding downstream 834504 21093851 ~ 21093965 (+)

Expression


Co-expression Network