G97209


Basic Information

Item Value
gene id G97209
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86602365 ~ 86675768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU107423
gcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacctgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctctcacctcagctgtagatctctgcagttcatccagagtgataatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagaggaacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctctttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggccaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatgtgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgccctacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacctgctggagcgcgtgctacgagtggctGCTGCTATGGTGAGATAAGGCAGGGcgttacctagcagagacttgtagatatcctgtagccagtgggtttagcGACGAGGGCCAAGCaaaacaaaacggatggcactgtgatagactgcatccaatttgttgagtagagtgttggaggctattttataaatgacatcgccgaagtctaggatcggtaggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcgatataggaagccgattctagatttaattttggattggagatgcttaatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccatgtattctaagtcagagccgtccggtgtagtgatgctggacgggcgggcaggtgcgggcagtgatcgattgaatagcatgcatttagttttacttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagctcgtcttgaggttagttaacacagtgtccaaaaaggGGCCAGAGGTAAACAGAATAGTGTCGTCTGcattagaggtggatcagagaatcacaagcagcaagagcgacatcattgatgtatacagagaagagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggttctccgatttgacacactgaactctgtcagagaagtagttggtaaaccaggcgaggcaatcatttgagaaactagGGCTGTCGAGTCtgtcaataagaatgtggtgattgacagagtcgaaagccttggccaggtcgatgaataaggAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTAATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGTCCTCAGGATGGAGAATGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTAT
>TU107425
gaggtagtATCTGATACACCTGGATCACTGATGGACCAGTCACATTTAATGAATGAAATTAAAAAGGGGTGGTGGGTAGAATATATTTTGGAGAAATTGTCTCTCAGAGGTACGCTGGACTCATTTAGGTGGTGGAACTCAATTAGGATTTGTGACATTAGACAAGTGATATGAGACAAGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTAATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGATGACCTCACTGAGAAGATAGATGTGGTTGAGGAGGATCTCATTCGTAATCTGGAGGGGCCTCGGGAAGGAGAGGGATGTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCAGGAGTGCTCAAGTACTATTTGAGACGGTCCGGTGACACACatttcctagGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTAT
>TU107427
gagaacttgcacaactggtggctgactaaatactttttttgccccactgtatgtacccattaattcttgaagaatatatcaTATAAGTGATTAAAGAGCTTAGTTTAACattcataccccatcagaactcaAAATAGAACCTTGTTTTACcttaatgtttgtaaacaatgtgtaAGCAAACACTATAGGCCTCAAAACACAtgtataactataatgttgatacaGTATcacggatggtcagtccttgcattcatagttctgtctatgaatttgagagtgataTTATTTCTCCAGCccctccctcagctttttaccaaaacaacaGTGGCTGGGAtcacactttgttattgtttcaacttcTGATTGGCCCTAGTTGTTCCTTCTGATGTTGGAACAGTGGTATGAGACAAGGAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTAATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTGTAAGTAAGAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107423 False 3052 lncRNA 0.43 8 86602365 86675768
TU107425 False 1422 lncRNA 0.45 6 86602365 86669472
TU107427 True 1767 lncRNA 0.41 10 86602365 86635782

Neighbor

gene id symbol gene type direction distance location
LOC110532855 LOC106562987 coding downstream 200201 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 252595 86299040 ~ 86349770 (-)
LOC110531234 LOC106563028 coding downstream 314848 86235239 ~ 86287517 (-)
LOC110513354 LOC106569852 coding downstream 378413 86222196 ~ 86223952 (-)
LOC110531925 adgrb3 coding downstream 555189 85891577 ~ 86047176 (-)
LOC118966041 NA coding upstream 55163 86730919 ~ 86732537 (-)
LOC110518258 LOC105008825 coding upstream 108056 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 250671 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 282130 86957898 ~ 87049090 (-)
LOC118966727 LOC106577289 coding upstream 486509 87162277 ~ 87166534 (-)
G97227 NA non-coding downstream 5458 86482107 ~ 86596907 (-)
G97256 NA non-coding downstream 21329 86580000 ~ 86581036 (-)
G97211 NA non-coding downstream 22565 86577760 ~ 86579800 (-)
G97255 NA non-coding downstream 26396 86572941 ~ 86575969 (-)
G97210 LOC106592896 non-coding downstream 29496 86572169 ~ 86572869 (-)
G97278 NA non-coding upstream 61509 86737277 ~ 86739833 (-)
G97283 slc1a4 non-coding upstream 77977 86753745 ~ 86756765 (-)
G97285 NA non-coding upstream 81292 86757060 ~ 86757361 (-)
G97287 NA non-coding upstream 84420 86760188 ~ 86760829 (-)
G97176 NA other downstream 209276 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 451026 86146009 ~ 86153321 (-)
G96002 NA other downstream 1250599 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1341833 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 other downstream 1377215 85213382 ~ 85244441 (-)
G97308 NA other upstream 111289 86787057 ~ 86788052 (-)
G97535 NA other upstream 618589 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1237534 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1387694 88054545 ~ 88065123 (-)
G98510 NA other upstream 1543061 88218829 ~ 88220804 (-)

Expression


Co-expression Network