G97278


Basic Information

Item Value
gene id G97278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86737277 ~ 86739833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU107541
agcacTGATGCCACTAGCCAGCCCAAACTGGTGAATATTAATGTTtattttaatggcatagaatgatcttcttgctttgtctcttaTTTTACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacagGTTTAACCATGATGTAATACTACAGTAGATGGTGACAACAGGTTTAACCATGATGTAATACTACAGTAGatgacaacAGGTTTAACCATGATGTAATACTACAGTAGatgacaacAGGTTTAACCATGATGTAATACTACAGTAGGTGGTGACAACAGGTTTAACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacAGGTTTAACCATGATGTAATACTACAATAGATGACAACAGGTTTAACTATTTATTAttcagctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgtcttgttcatctctatcctcgtggggacctgAAATCCCTAAATGTCCCCATGAGAACATGGATAAAAGGACacatttgcgtgtgtgtgtgttcctccccAAAAATTGAACCCTCCTGACCCTCTTTTAGCCTTAAtagacagacactcacacagtTCCAGGAAATGGTACCGGGCAGCCACTGGGCACATTAAAGA
>TU107542
agcacTGATGCCACTAGCCAGCCCAAACTGGTGAATATTAATGTTtattttaatggcatagaatgatcttcttgctttgtctcttaTTTTACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacagGTTTAACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtagtactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtagtactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacAGGTTTAACCATGATGTAATACTACAGTAGGTGACAACAGGTTTAACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacAGGTTTAACCATGATGTAATACTACAATAGATGACAACAGGTTTAACTATTTATTAttcagctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgtcttgttcatctctatcctcgtggggacctgAAATCCCTAAATGTCCCCATGAGAACATGGATAAAAGGACacatttgcgtgtgtgtgtgttcctccccAAAAATTGAACCCTCCTGACCCTCTTTTAGCCTTAAtagacagacactcacacagtTCCAGGAAATGGTACCGGGCAGCCACTGGGCACATTAAAGA
>TU107554
agcacTGATGCCACTAGCCAGCCCAAACTGGTGAATATTAATGTTtattttaatggcatagaatgatcttcttgctttgtctcttaTTTTACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacatgtttaaccatgatgtaatactacagtagatgacaacAGGTTTAACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtagtactacagtagatgacaacaggtttaaccatgatgtagtactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacagGTTTAACCATGATGTAATACTACAGTAGATGGTGACAACAGGTTTAACCATGATGTAATACTACAGTAGatgacaacAGGTTTAACCATGATGTAATACTACAGTAGGTGGTGACAACAGGTTTAACCATGATGtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacaggtttaaccatgatgtaatactacagtagatgacaacAGGTTTAACCATGATGTAATACTACAATAGATGACAACAGGTTTAACTATTTATTAttcagctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgtcttgttcatctctatcctcgtggggacctgAAATCCCTAAATGTCCCCATGAGAACATGGATAAAAGGACacatttgcgtgtgtgtgtgttcctccccAAAAATTGAACCCTCCTGACCCTCTTTTAGCCTTAAtagacagacactcacacagtTCCAGGAAATGGTACCGGGCAGCCACTGGGCACATTAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107541 False 865 lncRNA 0.39 4 86737277 86739833
TU107542 False 1011 lncRNA 0.38 4 86737277 86739833
TU107554 True 1093 lncRNA 0.38 5 86737277 86739833

Neighbor

gene id symbol gene type direction distance location
LOC118966041 NA coding downstream 4740 86730919 ~ 86732537 (-)
LOC118936335 LOC106592896 coding downstream 39052 86663515 ~ 86698225 (-)
LOC118966040 LOC106592896 coding downstream 87110 86602322 ~ 86650167 (-)
LOC110532855 LOC106562987 coding downstream 335113 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 387507 86299040 ~ 86349770 (-)
LOC110518258 LOC105008825 coding upstream 43991 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 186606 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 218065 86957898 ~ 87049090 (-)
LOC118966727 LOC106577289 coding upstream 422444 87162277 ~ 87166534 (-)
LOC118966728 LOC106577282 coding upstream 428052 87167885 ~ 87204885 (-)
G97237 NA non-coding downstream 29425 86581649 ~ 86707852 (-)
G97209 NA non-coding downstream 61509 86602365 ~ 86675768 (-)
G97264 NA non-coding downstream 108112 86628862 ~ 86629165 (-)
G97263 NA non-coding downstream 108615 86627942 ~ 86628662 (-)
G97283 slc1a4 non-coding upstream 13912 86753745 ~ 86756765 (-)
G97285 NA non-coding upstream 17227 86757060 ~ 86757361 (-)
G97287 NA non-coding upstream 20355 86760188 ~ 86760829 (-)
G97290 LOC106560778 non-coding upstream 25891 86765724 ~ 86765985 (-)
G97251 NA other downstream 113966 86566477 ~ 86623311 (-)
G97176 NA other downstream 344188 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 585938 86146009 ~ 86153321 (-)
G96002 NA other downstream 1385511 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1476745 85247338 ~ 85299641 (-)
G97308 NA other upstream 47224 86787057 ~ 86788052 (-)
G97535 NA other upstream 554524 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1173469 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1323629 88054545 ~ 88065123 (-)
G98510 NA other upstream 1478996 88218829 ~ 88220804 (-)

Expression


Co-expression Network