G97283 (slc1a4)


Basic Information

Item Value
gene id G97283
gene name slc1a4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86753745 ~ 86756765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU107567
TGTGAAACACATGTATATTTAACGTTAAAAGACAGAGACAAGTAAAAGAGACAGCTGTGTTACAAAGATAGACGTCATCATTGCACATGAAACAAAGTCGTTATTCCTGTTGGTCAAAATACCATAAAACAAAATGGAGGACATACTTTATAGGCTGCgtgccagatctgtttgtgctaccATGTCATGCcactcattgtcatgccaacAGATTGTCTTGACAATTACATCgatggagttggcaagagcacaaccAGAGCTGGACCAGGCTACATACTTTAGGCTATTAGAAAAGTAGTTCCCCAGCAGAGAAAGGCGTTAGGAACAGATTTGGCAACTAGAAATTGAGAGAAAATACCTAAATCGCATTTCAAAAATAGAAATTATGCAAAATGTTAACACAAttagaataaataaaaaaatccttcATATAGTTTATTCAAGTACATATCTGCGATTGTTCCAGATTATTTCAACATATTCTCACGAATACTTTCAATTCGGTCAGCTTCGGGGTAAAAGATTTAAAAGTCATTATAAAAGTAAAGGGTTGTTCGATTGAAAGAGGATCATGTTAATTAGAGAAAGAATATTTAAACTTAATAAGCTCCTTCTCACAACCAGTTTCTGCTTTCCAAAAAATACATCATTCACTGTCAAACTATGTAGAGCCTCAGTATTCCAATGACAGATTGGCAACCTTTTCACATTTTTAAGGACATTATAGTTTAGAGACAATATATTCCCAAAGATCCTGACAAATCAGGGTGCATACAGTTTTGTATAAAACAGTTAATAACATATAATTGTCCTTTCTAGAGGGACAACCTTCCATTTCCAACATCTAAAAACTGCTTCAACAAACAATTAGTCTGAGTAGAAGTGGAATTGTGGAACAGAGTTGATACATTAGTGAGTTAGTACAACATAATTCCCCCCCATAAATCAGAGTAAATCATTTCCAGCAAACAGCAATAGTGATTCATTACaaagaaaaaaagaaatacaTTTGACCAGATAGATAAACGAGGCCACATTGGCCCATTTAGGATCAAATTAAATTAAAACGCTGTACTATCAAATGCCTGCTCCATTCTCATGTCAGAACTCAAAACATTGAGCCACGCCACCACTAGGTGGCAGCAGAACCATTACGCCACACCACCACTAGGTGGCAGCAGAACCACTACAGCACGCCACCAATAGGTGGCAGCAGAACAACTACACAACGCCACCACTAGGTGGCAGCAGAACCACTGCAGTAATATGATAATTATTTTGTCAATTtgaacattttagtcatttggaAAACATACATGTATCCCATAGACTGTATAAGATGCAACAGGAAAAGGCTGCTCTAACAACTTTGGCAGTTTCCTACATGTCCAAGGATTTCGATAAATACTATTCCGAGTCAATAATGAGAGCATGCCTTTATCAATGCCATGTGTCGTCCCAAATGGCTATCTATTCCTTACATAATGTcatgcttttaaccagagccctatggggcagaatgtagtgcactatatagggaacagggtgctgggCTCAGGttaaaataagtgcactatatagggaacaggctaCCATTTGTAACATAGCCCGTCTGACCATGCTTCCTCTCAATTCAAAAATAAAAAGTTCCAAAGAACATATGGTTGGTTTGGTTTCTTCAGTAAATGAAACCCATAGTAGCAAGGGTCTGGGACATCACTGATGGAGGCAACATCTATTCTCACAGCAATAGAAGGATAGTTGGCCTCGGTCTGCACTTTAACAGTTTAGTAAATGGAGTCAGCTCACCACCATATTTCTAACGTCCATTTAAGGCAAATGTCCACTTAGTCACGCATTGATGTCAATCTGAGACAAAGTGAAAATCTAATTGAAGTAGAAGTTAGGATTTGCTCTAATTGAACCTGCACTATATATCGACACAGATCCTTATGGTCCTAACTCCAATATTAGATACAGGCACCATAGTAGGCCATTGGGTCAGTAGGTTCCCAGTACATAAACAGAAAGTTAACTGTGGCTCTTCCTCAATATTTACCCCAAATATTTGAGAGACTTTTGTCATTCGAGGGGTTAATGTTTCACGTTCTGGGTTGACTATCGACAGAAAACTCCAGGTCAGTTAGTAAATGATTCTCCTTTCCATCTGCCTTGTGAGGTCACAGCCATGTCACGGTTAGGAGAGATTCCCTTTTTAGATTCAGACCACTCTCACCCAAAACCAGAAAGCAGCCTGGATTCATTCTAAAGGGCGAGGCTAACCTTCCTGTGGCTTTTACATACACTTATAGAATACTCCAAATAGGAAGTACCACTATATAAAACAAACTTTATCTAGGGCACTTTTTTCAGAGAAGTGAAATGACTCATGAACTGTTTTAAGAGGTATGGTAAAGGTGATCAGAGACGATTCGGGTTGACTCGGTCGTGTCacgagtagcagcagcagcatcgtAACCTTAGACACCAGAGggggctggtgaggggaggacggctaataataatgtctggaatggagtgaatgtaaTTACATCAAACACGAAGAAAACCATATCATTGATGTGTTTTGATACCGTTCAATTCATTTCGTTCCAGCCCTtgctatgagcccgtcctccgaATTGaagtgccaccagccaccactgattGTAACCATAGAGACAGAATTCACAGTTGTTTTACGAGTTCACAGGACAGACTCAATGGCTTCCGCGGTCTCCCTGGGGGATTGGTCGCCTGCTGAACCCAGGGTTTGGTGCGTGACGAGCGGGGAGGTCTCCTCGTCAGCCTGGGTGTTGGCCACCGCGTCCACCAGGACCTCCGCTAGCTCCTCCCCCAGGTGTTGTTTCTTCATCTCCTGTTGGTTGATGTGGTGGAGGATCCCTGCCCCCAGGGCGTCTCCCTCCACGTTCACTACGGTGGTGGTGCGG
>TU107568
TGTGAAACACATGTATATTTAACGTTAAAAGACAGAGACAAGTAAAAGAGACAGCTGTGTTACAAAGATAGACGTCATCATTGCACATGAAACAAAGTCGTTATTCCTGTTGGTCAAAATACCATAAAACAAAATGGAGGACATACTTTATAGGCTGCgtgccagatctgtttgtgctaccATGTCATGCcactcattgtcatgccaacAGATTGTCTTGACAATTACATCgatggagttggcaagagcacaaccAGAGCTGGACCAGGCTACATACTTTAGGCTATTAGAAAAGTAGTTCCCCAGCAGAGAAAGGCGTTAGGAACAGATTTGGCAACTAGAAATTGAGAGAAAATACCTAAATCGCATTTCAAAAATAGAAATTATGCAAAATGTTAACACAAttagaataaataaaaaaatccttcATATAGTTTATTCAAGTACATATCTGCGATTGTTCCAGATTATTTCAACATATTCTCACGAATACTTTCAATTCGGTCAGCTTCGGGGTAAAAGATTTAAAAGTCATTATAAAAGTAAAGGGTTGTTCGATTGAAAGAGGATCATGTTAATTAGAGAAAGAATATTTAAACTTAATAAGCTCCTTCTCACAACCAGTTTCTGCTTTCCAAAAAATACATCATTCACTGTCAAACTATGTAGAGCCTCAGTATTCCAATGACAGATTGGCAACCTTTTCACATTTTTAAGGACATTATAGTTTAGAGACAATATATTCCCAAAGATCCTGACAAATCAGGGTGCATACAGTTTTGTATAAAACAGTTAATAACATATAATTGTCCTTTCTAGAGGGACAACCTTCCATTTCCAACATCTAAAAACTGCTTCAACAAACAATTAGTCTGAGTAGAAGTGGAATTGTGGAACAGAGTTGATACATTAGTGAGTTAGTACAACATAATTCCCCCCCATAAATCAGAGTAAATCATTTCCAGCAAACAGCAATAGTGATTCATTACaaagaaaaaaagaaatacaTTTGACCAGATAGATAAACGAGGCCACATTGGCCCATTTAGGATCAAATTAAATTAAAACGCTGTACTATCAAATGCCTGCTCCATTCTCATGTCAGAACTCAAAACATTGAGCCACGCCACCACTAGGTGGCAGCAGAACCATTACGCCACACCACCACTAGGTGGCAGCAGAACCACTACAGCACGCCACCAATAGGTGGCAGCAGAACAACTACACAACGCCACCACTAGGTGGCAGCAGAACCACTGCAGTAATATGATAATTATTTTGTCAATTtgaacattttagtcatttggaAAACATACATGTATCCCATAGACTGTATAAGATGCAACAGGAAAAGGCTGCTCTAACAACTTTGGCAGTTTCCTACATGTCCAAGGATTTCGATAAATACTATTCCGAGTCAATAATGAGAGCATGCCTTTATCAATGCCATGTGTCGTCCCAAATGGCTATCTATTCCTTACATAATGTcatgcttttaaccagagccctatggggcagaatgtagtgcactatatagggaacagggtgctgggAAACCCATAGTAGCAAGGGTCTGGGACATCACTGATGGAGGCAACATCTATTCTCACAGCAATAGAAGGATAGTTGGCCTCGGTCTGCACTTTAACAGTTTAGTAAATGGAGTCAGCTCACCACCATATTTCTAACGTCCATTTAAGGCAAATGTCCACTTAGTCACGCATTGATGTCAATCTGAGACAAAGTGAAAATCTAATTGAAGTAGAAGTTAGGATTTGCTCTAATTGAACCTGCACTATATATCGACACAGATCCTTATGGTCCTAACTCCAATATTAGATACAGGCACCATAGTAGGCCATTGGGTCAGTAGGTTCCCAGTACATAAACAGAAAGTTAACTGTGGCTCTTCCTCAATATTTACCCCAAATATTTGAGAGACTTTTGTCATTCGAGGGGTTAATGTTTCACGTTCTGGGTTGACTATCGACAGAAAACTCCAGGTCAGTTAGTAAATGATTCTCCTTTCCATCTGCCTTGTGAGGTCACAGCCATGTCACGGTTAGGAGAGATTCCCTTTTTAGATTCAGACCACTCTCACCCAAAACCAGAAAGCAGCCTGGATTCATTCTAAAGGGCGAGGCTAACCTTCCTGTGGCTTTTACATACACTTATAGAATACTCCAAATAGGAAGTACCACTATATAAAACAAACTTTATCTAGGGCACTTTTTTCAGAGAAGTGAAATGACTCATGAACTGTTTTAAGAGGTATGGTAAAGGTGATCAGAGACGATTCGGGTTGACTCGGTCGTGTCacgagtagcagcagcagcatcgtAACCTTAGACACCAGAGggggctggtgaggggaggacggctaataataatgtctggaatggagtgaatgtaaTTACATCAAACACGAAGAAAACCATATCATTGATGTGTTTTGATACCGTTCAATTCATTTCGTTCCAGCCCTtgctatgagcccgtcctccgaATTGaagtgccaccagccaccactgattGTAACCATAGAGACAGAATTCACAGTTGTTTTACGAGTTCACAGGACAGACTCAATGGCTTCCGCGGTCTCCCTGGGGGATTGGTCGCCTGCTGAACCCAGGGTTTGGTGCGTGACGAGCGGGGAGGTCTCCTCGTCAGCCTGGGTGTTGGCCACCGCGTCCACCAGGACCTCCGCTAGCTCCTCCCCCAGGTGTTGTTTCTTCATCTCCTGTTGGTTGATGTGGTGGAGGATCCCTGCCCCCAGGGCGTCTCCCTCCACGTTCACTACGGTGGTGGTGCGG
>TU107569
TGTGAAACACATGTATATTTAACGTTAAAAGACAGAGACAAGTAAAAGAGACAGCTGTGTTACAAAGATAGACGTCATCATTGCACATGAAACAAAGTCGTTATTCCTGTTGGTCAAAATACCATAAAACAAAATGGAGGACATACTTTATAGGCTGCgtgccagatctgtttgtgctaccATGTCATGCcactcattgtcatgccaacAGATTGTCTTGACAATTACATCgatggagttggcaagagcacaaccAGAGCTGGACCAGGCTACATACTTTAGGCTATTAGAAAAGTAGTTCCCCAGCAGAGAAAGGCGTTAGGAACAGATTTGGCAACTAGAAATTGAGAGAAAATACCTAAATCGCATTTCAAAAATAGAAATTATGCAAAATGTTAACACAAttagaataaataaaaaaatccttcATATAGTTTATTCAAGTACATATCTGCGATTGTTCCAGATTATTTCAACATATTCTCACGAATACTTTCAATTCGGTCAGCTTCGGGGTAAAAGATTTAAAAGTCATTATAAAAGTAAAGGGTTGTTCGATTGAAAGAGGATCATGTTAATTAGAGAAAGAATATTTAAACTTAATAAGCTCCTTCTCACAACCAGTTTCTGCTTTCCAAAAAATACATCATTCACTGTCAAACTATGTAGAGCCTCAGTATTCCAATGACAGATTGGCAACCTTTTCACATTTTTAAGGACATTATAGTTTAGAGACAATATATTCCCAAAGATCCTGACAAATCAGGGTGCATACAGTTTTGTATAAAACAGTTAATAACATATAATTGTCCTTTCTAGAGGGACAACCTTCCATTTCCAACATCTAAAAACTGCTTCAACAAACAATTAGTCTGAGTAGAAGTGGAATTGTGGAACAGAGTTGATACATTAGTGAGTTAGTACAACATAATTCCCCCCCATAAATCAGAGTAAATCATTTCCAGCAAACAGCAATAGTGATTCATTACaaagaaaaaaagaaatacaTTTGACCAGATAGATAAACGAGGCCACATTGGCCCATTTAGGATCAAATTAAATTAAAACGCTGTACTATCAAATGCCTGCTCCATTCTCATGTCAGAACTCAAAACATTGAGCCACGCCACCACTAGGTGGCAGCAGAACCATTACGCCACACCACCACTAGGTGGCAGCAGAACCACTGCAGTAATATGATAATTATTTTGTCAATTtgaacattttagtcatttggaAAACATACATGTATCCCATAGACTGTATAAGATGCAACAGGAAAAGGCTGCTCTAACAACTTTGGCAGTTTCCTACATGTCCAAGGATTTCGATAAATACTATTCCGAGTCAATAATGAGAGCATGCCTTTATCAATGCCATGTGTCGTCCCAAATGGCTATCTATTCCTTACATAATGTcatgcttttaaccagagccctatggggcagaatgtagtgcactatatagggaacagggtgctgggCTCAGGttaaaataagtgcactatatagggaacaggctaCCATTTGTAACATAGCCCGTCTGACCATGCTTCCTCTCAATTCAAAAATAAAAAGTTCCAAAGAACATATGGTTGGTTTGGTTTCTTCAGTAAATGAAACCCATAGTAGCAAGGGTCTGGGACATCACTGATGGAGGCAACATCTATTCTCACAGCAATAGAAGGATAGTTGGCCTCGGTCTGCACTTTAACAGTTTAGTAAATGGAGTCAGCTCACCACCATATTTCTAACGTCCATTTAAGGCAAATGTCCACTTAGTCACGCATTGATGTCAATCTGAGACAAAGTGAAAATCTAATTGAAGTAGAAGTTAGGATTTGCTCTAATTGAACCTGCACTATATATCGACACAGATCCTTATGGTCCTAACTCCAATATTAGATACAGGCACCATAGTAGGCCATTGGGTCAGTAGGTTCCCAGTACATAAACAGAAAGTTAACTGTGGCTCTTCCTCAATATTTACCCCAAATATTTGAGAGACTTTTGTCATTCGAGGGGTTAATGTTTCACGTTCTGGGTTGACTATCGACAGAAAACTCCAGGTCAGTTAGTAAATGATTCTCCTTTCCATCTGCCTTGTGAGGTCACAGCCATGTCACGGTTAGGAGAGATTCCCTTTTTAGATTCAGACCACTCTCACCCAAAACCAGAAAGCAGCCTGGATTCATTCTAAAGGGCGAGGCTAACCTTCCTGTGGCTTTTACATACACTTATAGAATACTCCAAATAGGAAGTACCACTATATAAAACAAACTTTATCTAGGGCACTTTTTTCAGAGAAGTGAAATGACTCATGAACTGTTTTAAGAGGTATGGTAAAGGTGATCAGAGACGATTCGGGTTGACTCGGTCGTGTCacgagtagcagcagcagcatcgtAACCTTAGACACCAGAGggggctggtgaggggaggacggctaataataatgtctggaatggagtgaatgtaaTTACATCAAACACGAAGAAAACCATATCATTGATGTGTTTTGATACCGTTCAATTCATTTCGTTCCAGCCCTtgctatgagcccgtcctccgaATTGaagtgccaccagccaccactgattGTAACCATAGAGACAGAATTCACAGTTGTTTTACGAGTTCACAGGACAGACTCAATGGCTTCCGCGGTCTCCCTGGGGGATTGGTCGCCTGCTGAACCCAGGGTTTGGTGCGTGACGAGCGGGGAGGTCTCCTCGTCAGCCTGGGTGTTGGCCACCGCGTCCACCAGGACCTCCGCTAGCTCCTCCCCCAGGTGTTGTTTCTTCATCTCCTGTTGGTTGATGTGGTGGAGGATCCCTGCCCCCAGGGCGTCTCCCTCCACGTTCACTACGGTGGTGGTGCGG

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

NR:

description
neutral amino acid transporter A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107567 False 2951 lncRNA 0.46 2 86753745 86756765
TU107568 False 2816 lncRNA 0.42 3 86753745 86756765
TU107569 True 2881 lncRNA 0.41 2 86753745 86756765

Neighbor

gene id symbol gene type direction distance location
LOC118966041 NA coding downstream 21208 86730919 ~ 86732537 (-)
LOC118936335 LOC106592896 coding downstream 55520 86663515 ~ 86698225 (-)
LOC118966040 LOC106592896 coding downstream 103578 86602322 ~ 86650167 (-)
LOC110532855 LOC106562987 coding downstream 351581 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 403975 86299040 ~ 86349770 (-)
LOC110518258 LOC105008825 coding upstream 27059 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 169674 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 201133 86957898 ~ 87049090 (-)
LOC118966727 LOC106577289 coding upstream 405512 87162277 ~ 87166534 (-)
LOC118966728 LOC106577282 coding upstream 411120 87167885 ~ 87204885 (-)
G97278 NA non-coding downstream 13912 86737277 ~ 86739833 (-)
G97237 NA non-coding downstream 45893 86581649 ~ 86707852 (-)
G97285 NA non-coding upstream 295 86757060 ~ 86757361 (-)
G97287 NA non-coding upstream 3423 86760188 ~ 86760829 (-)
G97290 LOC106560778 non-coding upstream 8959 86765724 ~ 86765985 (-)
G97312 NA non-coding upstream 42263 86799028 ~ 86804675 (-)
G97251 NA other downstream 130434 86566477 ~ 86623311 (-)
G97176 NA other downstream 360656 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 602406 86146009 ~ 86153321 (-)
G96002 NA other downstream 1401979 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1493213 85247338 ~ 85299641 (-)
G97308 NA other upstream 30292 86787057 ~ 86788052 (-)
G97535 NA other upstream 537592 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1156537 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1306697 88054545 ~ 88065123 (-)
G98510 NA other upstream 1462064 88218829 ~ 88220804 (-)

Expression


Co-expression Network