G96820


Basic Information

Item Value
gene id G96820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86913219 ~ 87103266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU106952
tatcatgactcagtactggtaccccttgtagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgtagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtaccccttgcagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtactccttgtagacagtatagac
>TU106953
gaatagacatgttatcatgactcagtactggtaccccttgcagacagaatagacatgttatcatgactcagtactggtaccccttgaagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtaccccttgcagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtactccttgtagacagtatagacacgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactggtaccccttgcagacagtatagacatgttatcatgactcagtactagtactccttgtagacagtatagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106952 False 778 lncRNA 0.44 5 86913219 87103266
TU106953 True 882 lncRNA 0.35 4 86913529 87103266

Neighbor

gene id symbol gene type direction distance location
LOC110516875 LOC106577366 coding upstream 129502 86764287 ~ 86783717 (+)
LOC110531632 slc1a4 coding upstream 156442 86736884 ~ 86756777 (+)
LOC118966035 LOC106592896 coding upstream 317648 86562981 ~ 86595571 (+)
LOC118966726 NA coding upstream 353956 86557726 ~ 86559263 (+)
LOC118966725 NA coding upstream 359564 86537425 ~ 86553655 (+)
LOC100135993 LOC100135993 coding downstream 267517 87370783 ~ 87373089 (+)
LOC118966047 adgrb3 coding downstream 373238 87476504 ~ 87645037 (+)
LOC118966730 NA coding downstream 545663 87648929 ~ 87661492 (+)
LOC118966052 LOC106577294 coding downstream 817702 87920968 ~ 87928366 (+)
LOC110517253 xpo1b coding downstream 850599 87953865 ~ 88022972 (+)
G96808 NA non-coding upstream 15626 86897011 ~ 86897593 (+)
G96777 NA non-coding upstream 67785 86844815 ~ 86845434 (+)
G96772 NA non-coding upstream 75586 86837331 ~ 86837633 (+)
G96762 NA non-coding upstream 87933 86825076 ~ 86825286 (+)
G96761 NA non-coding upstream 88312 86824588 ~ 86824907 (+)
G96926 NA non-coding downstream 2 87103268 ~ 87104060 (+)
G96980 NA non-coding downstream 118416 87221682 ~ 87224131 (+)
G97575 NA non-coding downstream 276597 87379863 ~ 87380492 (+)
G97585 NA non-coding downstream 311121 87414387 ~ 87533992 (+)
G97588 NA non-coding downstream 314416 87417682 ~ 87448836 (+)
LOC118966033 LOC106562881 other upstream 417527 86492069 ~ 86495729 (+)
G96630 LOC106592896 other upstream 452377 86460228 ~ 86572480 (+)
LOC118966024 LOC106562881 other upstream 473747 86420114 ~ 86443279 (+)
G96577 NA other upstream 500007 86411207 ~ 86413212 (+)
G96133 NA other upstream 1275164 85637747 ~ 85638055 (+)
G97752 NA other downstream 653775 87757041 ~ 87757546 (+)
G98104 NA other downstream 1027772 88130944 ~ 88165405 (+)
LOC118966060 LOC106613898 other downstream 1533784 88608182 ~ 88744413 (+)
LOC118966061 NA other downstream 1537747 88551971 ~ 88647803 (+)

Expression


Co-expression Network