XLOC_020399


Basic Information

Item Value
gene id XLOC_020399
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20571834 ~ 20573960 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042136
gctgtgaaatgtttattttgaacatcttggcatttgcaaaaatgaaataaaaagtataacTTCATGGAAAGTCTATACACAGAGTACATACATCAgtcaaaaacattaatttataacATATTATGATAAACATAaggaatcaaaccagaaaaataAAGTCCAACATGAGGATCTAAATGCATTCCTTTATAAACATCatcttttttgtaatatttttaacatatttatgaATAGAATCATCTACAACAGTGTTTCTccaccacattcctggaggaccaccagcactgcatgttttggatgcaGGTCCTTTAGTCTCTGCAAACGAGcggatgatctgaatcaggtgtgcttggtgaaggagacatgaaaaatgtgcagagctggtggtgcTCCAGGAAcgaggttgagaaacactgatctacaaCATAAGTTGATCctcattttAGTGCAGGGCACATCTGATCTGTTCAAATAGAAAAGCTGAACTAATTTAAGCTTTCCGTTAGATAGAGATTAACCAATAAAAGGCAAAGCAGTTAGGATCCATACCCTGTGTTCGCTCAACTGTCGTAAGTTAACAATAGGGGGCAGCAAAACAGCTTAGTTCAAGTACCTTCCTGTTTCATTTTAAGCGGCAGCACTCGAGCAGGGAACATTTAGTGTCTAACACctcataaaatgttatttataaacaGACTATACAAGTATTAGAACCGCATGATGGAGTGGTGGCTTGCGCACAAGAAGCTAGCTTCGTATTTTATTGCCAACATGCAAACTGACATGAAATAAGTCATAAGACTGACATTCCCTTTTACACAAAGTACATAGAAGAGGCATTAAAGACATACATATATATGATCACGGGTTATAAAATGCTCTGAAAAAAACCTCTTTAAGAGTTTTCACACAACTTTAGAACATTTTATATCGAGTAAAAGTATTTCACgttaatttatttgacatatAAACTGGGCACCAAAATGTACACACAAAACAcccatatataatatatacaataagaTACAAAATTTCTACACCTCAAGTCTTGATACTGAGGCTATTGGTGTTTAGCTGATAAATATGTAATGCCTTATAAAGACGATGTGCTTTTTTATGTTGTTACTACAGTACTTTTGAATCCGTGTGTGTGCGTGATTAACTTTTATGTGGGCATGACTCAGAAGTAGGTGGCAGTGTATTATAGAAGCACTTAATGTCCAGAGCGAACAAAATCAGCTAACTCTTTTTGTAAGACATACTTAATTTTTAAACAGTCTTCAAGTAACCCAGTGGTTAACAGGTTGCGATTTTGGGCGAGTACAATGTTTAAATCCATGTTGAATTGGCAGTGTGAAGTGTTTTGCCTACTAATGTGCATATTAATTGAATTGCCTAGGCAAAATGCAGTGTATGCTTTTTTTCCATCTTTTTAGGGCATTGGCAATTTCTTGGCAAGCAGAAAGCACCCATTTAATAATTACAAATCTAAATCACAGAATGAGTGCCAAAATATTAAGAGCTTACTTCTATTTATATAGGCATATTTTGTAGAAAATTACATTAACGGTCATTATGAGTCATTACAAGCTTGGCCTTCTCACAAAGTTCACAACGGGTATTGAGTGCCAGCCAGCCCTACATGGAAGTATGTACTGTAATTCATCATAAATGTCTCaataattgtgtaaaatatcCTAAGAGACCAAAAGAAAGGTTAGATTATAAATAACTGCTGATGTAAACGACCTCTCAGTAACGACGTAACTCATTGCTCCCATTGAAACATAAGCCCTAGATGTATGTAGGACTGGTATCAAAATGTGTTTCAGTTAGAAATGACAATACTGTGCTTTTTACCCCTGTGGACACCGGgtgtgtatattttatatcatctTCATGTTAAATTTCCGTGCCCCTCCTTGACCCCCGCTGGCAGCAGGGCCGTCTACCTTTCTGAATGAATACTCTACTGAGAAATTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042136 True 1985 lncRNA 0.36 2 20571834 20573960

Neighbor

gene id symbol gene type direction distance location
XLOC_020398 nfil3-4 coding upstream 11047 20560041 ~ 20560787 (+)
XLOC_020397 si:dkey-172o19.2 coding upstream 24427 20546612 ~ 20547407 (+)
XLOC_020396 onecut3a coding upstream 98267 20461488 ~ 20473567 (+)
XLOC_020395 NA coding upstream 137817 20433570 ~ 20434017 (+)
XLOC_020394 foxq2 coding upstream 142460 20427170 ~ 20429374 (+)
XLOC_020400 peak3 coding downstream 136474 20710434 ~ 20712654 (+)
XLOC_020401 si:dkey-211f22.5 coding downstream 146848 20720808 ~ 20747062 (+)
XLOC_020402 CU693455.2 coding downstream 519891 21093851 ~ 21093965 (+)
XLOC_020403 NA coding downstream 560749 21134709 ~ 21141119 (+)
XLOC_020404 crlf1b coding downstream 578887 21152847 ~ 21165192 (+)
XLOC_020393 NA non-coding upstream 239000 20312803 ~ 20332834 (+)
XLOC_020392 NA non-coding upstream 306307 20261231 ~ 20265527 (+)
XLOC_020391 NA non-coding upstream 312487 20247909 ~ 20259347 (+)
XLOC_020390 NA non-coding upstream 324358 20246472 ~ 20247476 (+)
XLOC_020412 NA non-coding downstream 1095205 21669165 ~ 21766839 (+)
XLOC_020413 NA non-coding downstream 1212819 21786779 ~ 21787648 (+)
XLOC_020414 NA non-coding downstream 1215136 21789096 ~ 21797741 (+)

Expression


Co-expression Network