XLOC_002040 (BX927277.1)


Basic Information

Item Value
gene id XLOC_002040
gene name BX927277.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17890089 ~ 17890203 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003954
GTTGGCAGCTAGCTCTTTACAACTCTCACATgatcacccactgaagctaagcagggctgtgtctggtcagtacctggatgggagacaacatgggaaaattaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003954 True 115 rRNA 0.50 1 17890089 17890203

Neighbor

gene id symbol gene type direction distance location
XLOC_002038 ccl19b coding upstream 109987 17776981 ~ 17780102 (+)
XLOC_002037 pigo coding upstream 130211 17747880 ~ 17759878 (+)
XLOC_002036 slc20a1b coding upstream 161924 17713022 ~ 17728165 (+)
XLOC_002035 dre-mir-218b coding upstream 194749 17695265 ~ 17695340 (+)
XLOC_002034 drg1 coding upstream 198918 17681074 ~ 17691171 (+)
XLOC_002041 prkab1a coding downstream 46238 17936441 ~ 17946163 (+)
XLOC_002042 NA coding downstream 116920 18007123 ~ 18071506 (+)
XLOC_002043 NA coding downstream 350347 18240550 ~ 18282435 (+)
XLOC_002044 CR388008.1 coding downstream 666899 18557102 ~ 18559413 (+)
XLOC_002045 AL928714.1 coding downstream 908724 18798927 ~ 18802435 (+)
XLOC_002032 NA non-coding upstream 302212 17583381 ~ 17587877 (+)
XLOC_002031 NA non-coding upstream 392317 17459657 ~ 17497772 (+)
XLOC_002030 dre-mir-301c non-coding upstream 435517 17454490 ~ 17454572 (+)
XLOC_002029 dre-mir-130c-1 non-coding upstream 436586 17453363 ~ 17453503 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 1693086 19583289 ~ 19589733 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 1712131 19602334 ~ 19725594 (+)

Expression


Co-expression Network