XLOC_020401 (si:dkey-211f22.5)


Basic Information

Item Value
gene id XLOC_020401
gene name si:dkey-211f22.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20720808 ~ 20747062 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040487
ataTCAATGAAATGTTtctatgtgtaaataaatataggGTAAATCAAATTACTGTTCTGTTCAACATTGCAAATAGACCATGTAAACTCACAAGTGCTTGATGTTTTATAATGAAGTCTCAGCTGTTGCTGTCCATCAAGGCTCTAAAGAACTTGAGACCCTAGTTTTTACTCGACCACTCCGGCTCTGCCTGGAACCTCCTAAAAGGATCATCAGAGAAATGACATATCGGCGCATTTTTCCTGTGGAGTCCTTGAGTAAGGTGGAAAATCCATGGAAAGGCATCACTCTGAACCGCTGTATACTGGTGGCCGCGGTCATCGTGGTGGTCAGTTCAAGCATTGAGTTAGTACAAGAGACAATAGAGCCGTTCTTTGAGGAGACAGAAACAGATCTTCAGGCCGGTGGTCAGTCAGCAGAGTCGGACTCATGGTGGGACACCTTCGCATTTTGGAACTGGGGATCAGAGGATAAACTGGAagactttaaaaagaaaagagcaGCTAGACCGAGATACGATGGAGAGAGGCTCAGACCACACAGAATCCACAACAAAGAAATGGCTAAAGGATTACTCAAGGAGAAAGAATAACCTGCAATATTCCTGAAAggatgggga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101128

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040487 True 619 mRNA 0.43 5 20720808 20747062

Neighbor

gene id symbol gene type direction distance location
XLOC_020400 peak3 coding upstream 8154 20710434 ~ 20712654 (+)
XLOC_020399 NA coding upstream 146848 20571834 ~ 20573960 (+)
XLOC_020398 nfil3-4 coding upstream 160021 20560041 ~ 20560787 (+)
XLOC_020397 si:dkey-172o19.2 coding upstream 173401 20546612 ~ 20547407 (+)
XLOC_020396 onecut3a coding upstream 247241 20461488 ~ 20473567 (+)
XLOC_020402 CU693455.2 coding downstream 346789 21093851 ~ 21093965 (+)
XLOC_020403 NA coding downstream 387647 21134709 ~ 21141119 (+)
XLOC_020404 crlf1b coding downstream 405785 21152847 ~ 21165192 (+)
XLOC_020405 cpamd8 coding downstream 505728 21252790 ~ 21304247 (+)
XLOC_020406 odf3l2b coding downstream 558620 21305682 ~ 21311540 (+)
XLOC_020395 NA non-coding upstream 286791 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 387974 20312803 ~ 20332834 (+)
XLOC_020392 NA non-coding upstream 455281 20261231 ~ 20265527 (+)
XLOC_020391 NA non-coding upstream 461461 20247909 ~ 20259347 (+)
XLOC_020412 NA non-coding downstream 922103 21669165 ~ 21766839 (+)
XLOC_020413 NA non-coding downstream 1039717 21786779 ~ 21787648 (+)
XLOC_020414 NA non-coding downstream 1042034 21789096 ~ 21797741 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03926592_03926762 NA coding CI01000030 null 3926592 ~ 3927205 (+)