XLOC_020404 (crlf1b)


Basic Information

Item Value
gene id XLOC_020404
gene name crlf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21152847 ~ 21165192 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040489
CATGGGAGGAGCTTCAGGAGAATCAACTTTTTCAGCTTTTGAGGCGTACTCTATATTGATTCCTCTCCAAAATTGAGAGTGAAGCAATTTATGTGCAGGAAAATGGATTGTGCGCGCGCGCGCTCGCACCAGCATGACAAGAATCGAGTTGAGAGCGCGCGCGACAGACAAATGACAATTTCAGTCATTATGTTGTTTTTTGTCGCGTTTCTTCCATATGCGCTCTCAGCACATTTGCCTGTCATATCCCCCCAGGATCCAGTACTTCCCATTGGCTCGAGCTTGACTGCGGTGTGCACTGTGAGTGCCGAGCTGGAAATAACAGCTAGGTCCTTGTACTGGACACTGAATGGGAGACGCTTGGCTAGAAACACGTACAGAGTCCTGAGCCAGACCGAATCGAGTGTCACACTTCATCAACTCAATGGCTCCTTGCAGCAGTCAGGAGATAATCTGGTTTGCCATCGAAGTAATGGAGAAGTGCTGGCCGGGTCCTGTCTTTATGTCGGCTCATCCCCTGAGAAACCCATCAACCTGACATGctggtcacgaaacaccaaagaTCTGAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACGTTCATCAATACCAAATACGTCCTCAAGTACAAGCTGAAATGGTATGGTAAGGAAAAGGACTGTGAAGACTACACGGGACAGTCGTATACATGTTACGTTCCACGTGACCTTGCCATTTTTACACCATATGAAGCCTGGGTTGAGGCGACCAATCAGCTTGGCTCTGCCACTTCAGATGTCATCACCTTGGACATTTTAGATGTAGTAACTACAGACCCCCCTCCTGATGTTCTTGTAAGCCGTGTTGGAGATCTGGAAGATCAGTTAAGTGTACGTTGGGGCAGTCCTCCTGCCCTGAAAGACTACCTGTTTCAGGCCAAATATCAGATCCGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTAATAGATGATGCTGGGAACCAAACATCATGTCGTTTGGCTGGTCTCAGAGCGGGTACAGTGTATTTCGTCCAGGTACGATGCAACCCAGTGGGCATCTACGGTTCGAAGAAGGCAGGTATATGGAGCGACTGGAGCCACTCAACTGCCGCATCAACTCCTGGCATTGATAGGTCCCAAAGTGGCTCGTGCGATTCAAAGCCCAGCGAGAACAACTCAACGCTACGCAAGGAGCTCAAGCAGTTTTTCGGCTGGATGCGCAAGCACTCTTATGGCTGCACGGACGTTAGCATCAAACTGTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACACATGATCAGGTACTACAAAGCGGTAAATCATAGTGAAAACTCCAAAAGAAGACTTGGGAGAGTTTGCGGGGGCCGGCGACGACATGGGTTTTATCACTCTCCAGTGCTTGGGACGTTTCATTGGGATGAGTCAAGACTCTCTGATGAAGCGACATGATCTACTGTTTGCCTCCTGCCGTAGGGCTCATCAAATACGACAAAGGAAGCGCTTTTGTCTCAGGCGCGTTATTTATAAGGGCATTAAAACTTAAAGACTCAAAATGAGGAGAGAGAAAA
>TCONS_00040490
ATGTGCAGGAAAATGGATTGTGCGCGCGCGCGCTCGCACCAGCATGACAAGAATCGAGTTGAGAGCGCGCGCGACAGACAAATGACAATTTCAGTCATTATGTTGTTTTTTGTCGCGTTTCTTCCATATGCGCTCTCAGCACATTTGCCTGTCATATCCCCCCAGGATCCAGTACTTCCCATTGGCTCGAGCTTGACTGCGGTGTGCACTGTGAGTGCCGAGCTGGAAATAACAGCTAGGTCCTTGTACTGGACACTGAATGGGAGACGCTTGGCTAGAAACACGTACAGAGTCCTGAGCCAGACCGAATCGAGTGTCACACTTCATCAACTCAATGGCTCCTTGCAGCAGTCAGGAGATAATCTGGTTTGCCATCGAAGTAATGGAGAAGTGCTGGCCGGGTCCTGTCTTTATGTCGGCTCATCCCCTGAGAAACCCATCAACCTGACATGctggtcacgaaacaccaaagaTCTGAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACGTTCATCAATACCAAATACGTCCTCAAGTACAAGCTGAAATGGTATGGTAAGGAAAAGGACTGTGAAGACTACACGGGACAGTCGTATACATGTTACGTTCCACGTGACCTTGCCATTTTTACACCATATGAAGCCTGGGTTGAGGCGACCAATCAGCTTGGCTCTGCCACTTCAGATGTCATCACCTTGGACATTTTAGATGTAGTAACTACAGACCCCCCTCCTGATGTTCTTGTAAGCCGTGTTGGAGATCTGGAAGATCAGTTAAGTGTACGTTGGGGCAGTCCTCCTGCCCTGAAAGACTACCTGTTTCAGGCCAAATATCAGATCCGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTAATAGATGATGCTGGGAACCAAACATCATGTCGTTTGGCTGGTCTCAGAGCGGGTACAGTGTATTTCGTCCAGGTACGATGCAACCCAGTGGGCATCTACGGTTCGAAGAAGGCAGGTATATGGAGCGACTGGAGCCACTCAACTGCCGCATCAACTCCTGGCATTGATAGGTCCCAAAGTGGCTCGTGCGATTCAAAGCCCAGCGAGAACAACTCAACGCTACGCAAGGAGCTCAAGCAGTTTTTCGGCTGGATGCGCAAGCACTCTTATGGCTGCACGGACGTTAGCATCAAACTGTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACACATGATCAGGTCAGTAAAAAAAGACACACATCAAGACTCCACACAATCAATGTTGGCACACATGACACACACAGCCTCCATTTTGTGGTTTTGTGTGCAACCCACAAAAAAGAGAGCCCAAATATCTGGTAATTCTTTTGATCAATACACTCGCATTTGA

Function

symbol description
crlf1b Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein biological_process
GO:0097058 CRLF-CLCF1 complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080108-1 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

Ensembl:

ensembl_id ENSDARG00000006368

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040489 False 1584 mRNA 0.49 9 21152847 21165192
TCONS_00040490 True 1378 mRNA 0.49 7 21153031 21164560

Neighbor

gene id symbol gene type direction distance location
XLOC_020403 NA coding upstream 11728 21134709 ~ 21141119 (+)
XLOC_020402 CU693455.2 coding upstream 58882 21093851 ~ 21093965 (+)
XLOC_020401 si:dkey-211f22.5 coding upstream 405785 20720808 ~ 20747062 (+)
XLOC_020400 peak3 coding upstream 440193 20710434 ~ 20712654 (+)
XLOC_020399 NA coding upstream 578887 20571834 ~ 20573960 (+)
XLOC_020405 cpamd8 coding downstream 87598 21252790 ~ 21304247 (+)
XLOC_020406 odf3l2b coding downstream 140490 21305682 ~ 21311540 (+)
XLOC_020407 shc2 coding downstream 152405 21317597 ~ 21351469 (+)
XLOC_020408 shdb coding downstream 233316 21398508 ~ 21465808 (+)
XLOC_020409 mier2 coding downstream 351497 21516689 ~ 21547857 (+)
XLOC_020395 NA non-coding upstream 718830 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 820013 20312803 ~ 20332834 (+)
XLOC_020412 NA non-coding downstream 503973 21669165 ~ 21766839 (+)
XLOC_020413 NA non-coding downstream 621587 21786779 ~ 21787648 (+)
XLOC_020414 NA non-coding downstream 623904 21789096 ~ 21797741 (+)
XLOC_020415 NA non-coding downstream 657767 21822959 ~ 21823227 (+)
XLOC_020416 NA non-coding downstream 683094 21848286 ~ 21852131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_04163915_04171784 CRLF1B coding CI01000030 null 4163915 ~ 4171907 (+)