G98386


Basic Information

Item Value
gene id G98386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87925728 ~ 87926944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU108952
AAACCATCCACTTGGAGAGCTAGCCTGACCTACAAGGTGTAACAAACCATCCACTTGGAGAGCTAGCCTGACCTACAAGGTGTAACAAACCATCCACTTGGAGAGCTAGCCTGACCTACAAGGTGTAACAAACCATCCACTTGGAGAGCTAGCCTGACCTACAAGGTGTGACATTTGACTTACATTTATTTTGGGGTTCACTGAGAGTGGACAGTGCTCCAGCCAAAACAACCTCATTCCACTTGAAACTTTTGAATTTGCCAGCAGACTCTGCGACTTTGTGTCGTCCTGACGTCAGTGCACAGGATTCCACAGCGCTGCCAATGTTCATTAAGTTGTATCCCATTTGAACAGCCAGGGTCGGACGGTCGTACGTTTTGTTCTCCTCGTTGTAGCCAGCAACAGCTCTCACTGCCGTGATGACGTGAGGTAAATTACTAGGTATGACCAAGTCCTCAAAGCACATCAGAGGTGTACACGTCCTGGCCGTGATGAGGAGTCTTGCCACCTCTCTCATTCTTCGTTGAATGTATTGGTTTCTTCTGTCATCTGGCTGTAGTTTGTTGTACAGCTCCTCTCCCATGAGGAGGATACATTTGTCATTTCTAACCACAAATGAAACTCGGTCGGAGTTCATACCACAAACTATCTTCCAAAGACCTGTGCTGACGTAGTCGGGTTGAGGACGCATCTTGAACGCCATTGCTGACTGAATCCTCATCTTTGGTCCAGGTTTTGGTTCTTCAGCTTTGGGGTTCAGAGGGCAGTATCTGACATGCTTCCGTAGTGACTTTCGAATGTACAGACCTTGACAGTGCAAGCAGTGGGTGTAACATCGAGTGGATCCTGCCACTTTGGGACGGGAACAGGAGGCCATCTCTCCACTCCCACGTCTTGCTACGGCAACATCATGCACCCTCTGACATATCCTCTTAGCTGGATTATGAgccccagagtctgtttggatgTTCATGTCTTTGTTGCCGTCTGAAGGGCTGATCTCAGTCCCCGGGTTGTTTTCATCACATAAGTTGGACAAATCAGATGGTTCATTCAACACACCACTAGAATGGCATGTTCTCTTCGCTGGTTTACGTGCCTCAGAGTCTTCTTTAGTGCAGGAGCTACTGTCTGAAGAGTTGCTGTCTGTTACGGAGATGTTTTCCTCACTCCAGGTAGAGAAACTAGATGCTTCATTTGATTCCACGTTACTAGAA
>TU108953
ACAGGATTCCACAGCGCTGCCAATGTTCATTAAGTTGTATCCCATTTGAACAGCCAGGGTCGGACGGTCGTACGTTTTGTTCTCCTCGTTGTAGCCAGCAACAGCTCTCACTGCCGTGATGACGTGAGGTAAATTACTAGGTATGACCAAGTCCTCAAAGCACATCAGAGGTGTACACGTCCTGGCCGTGATGAGGAGTCTTGCCACCTCTCTCATTCTTCGTTGAATGTATTGGTTTCTTCTGTCATCTGGCTGTAGTTTGTTGTACAGCTCCTCTCCCATGAGGAGGATACATTTGTCATTTCTAACCACAAATGAAACTCGGTCGGAGTTCATACCACAAACTATCTTCCAAAGACCTGTGCTGACGTAGTCGGGTTGAGGACGCATCTTGAACGCCATTGCTGACTGAATCCTCATCTTTGGTCCAGGTTTTGGTTCTTCAGCTTTGGGGTTCAGAGGGCAGTATCTGACATGCTTCCGTAGTGACTTTCGAATGTACAGACCTTGACAGTGCAAGCAGTGGGTGTAACATCGAGTGGATCCTGCCACTTTGGGACGGGAACAGGAGGCCATCTCTCCACTCCCACGTCTTGCTACGGCAACATCATGCACCCTCTGACATATCCTCTTAGCTGGATTATGAgccccagagtctgtttggatgTTCATGTCTTTGTTGCCGTCTGAAGGGCTGATCTCAGTCCCCGGGTTGTTTTCATCACATAAGTTGGACAAATCAGATGGTTCATTCAACACACCACTAGAATGGCATGTTCTCTTCGCTGGTTTACGTGCCTCAGAGTCTTCTTTAGTGCAGGAGCTACTGTCTGAAGAGTTGCTGTCTGTTACGGAGATGTTTTCCTCACTCCAGGTAGAGAAACTAGATGCTTCATTTGATTCCACGTTACTAGAA

Function

NR:

description
uncharacterized protein LOC110531516

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU108952 False 1217 lncRNA 0.48 1 87925728 87926944
TU108953 True 916 lncRNA 0.48 1 87925728 87926643

Neighbor

gene id symbol gene type direction distance location
LOC110531505 LOC106597820 coding downstream 6050 87911053 ~ 87919678 (-)
LOC110508309 LOC106600605 coding downstream 100251 87773812 ~ 87825477 (-)
LOC118966049 ehbp1 coding downstream 179639 87664667 ~ 87746089 (-)
LOC118966042 LOC106577473 coding downstream 643489 87260566 ~ 87282239 (-)
LOC118966045 LOC106577282 coding downstream 683321 87232925 ~ 87242407 (-)
LOC110531618 LOC106577176 coding upstream 102584 88029528 ~ 88053890 (-)
pex13 LOC106592834 coding upstream 127601 88054545 ~ 88065123 (-)
LOC118936685 LOC106577316 coding upstream 165100 88092044 ~ 88124727 (-)
LOC100499622 alb1 coding upstream 204094 88131038 ~ 88144466 (-)
LOC118966733 NA coding upstream 232173 88159117 ~ 88164611 (-)
G98377 NA non-coding downstream 21682 87903752 ~ 87904046 (-)
G98376 NA non-coding downstream 22302 87902563 ~ 87903426 (-)
G98375 NA non-coding downstream 23178 87902151 ~ 87902550 (-)
G98373 NA non-coding downstream 24926 87900476 ~ 87900802 (-)
G98387 NA non-coding upstream 390 87927334 ~ 87929123 (-)
G98388 NA non-coding upstream 2870 87929814 ~ 87930626 (-)
G98389 NA non-coding upstream 4147 87931091 ~ 87931806 (-)
G98393 NA non-coding upstream 18948 87945892 ~ 87946606 (-)
G98401 NA non-coding upstream 29701 87956645 ~ 88022962 (-)
G97535 NA other downstream 630729 87294357 ~ 87294999 (-)
G97308 NA other downstream 1137676 86787057 ~ 86788052 (-)
G97251 NA other downstream 1302417 86566477 ~ 86623311 (-)
G97176 NA other downstream 1532639 86392561 ~ 86393089 (-)
G98510 NA other upstream 291885 88218829 ~ 88220804 (-)
G98549 NA other upstream 387332 88314276 ~ 88314696 (-)
G98616 NA other upstream 625030 88551974 ~ 88644067 (-)
LOC118966065 NA other upstream 850595 88757265 ~ 88782119 (-)

Expression


Co-expression Network