G98387


Basic Information

Item Value
gene id G98387
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87927334 ~ 87929123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU108956
GGCATTAAATCTGATATTGGAATCGCTATAACACATTAGAGAAAGGAATGCATCCTGCCCAATTCAATCCATAAAAGTGGAAATGTACAACAAAGCAGAAGATTTCACAATGATAATCATTCAATAGTAACATTAATACAGGAAAATACAGTAGTTTGATCTGAAAATAGATTGAGTTTATGTAACATGTCCTTAGGGGTATCAGGTAGCCTCGCGTTAGAGAGACAGGCCTGGAACCAACATGTCGCTGGTCTCAATTAGGTCCACTATTGCTCTAAATGATTAACACAGCTGTTCACACAAAGGttcattttggagaaatgtaaatAGAGCACTAATTTCACCTTTACAAAAATAAAGAAAGGATGTCACCCAGTGTACTCTCTATCGCCCCCTATCTTCGataaacacagatattaaaactGTCTACTAAAATTGTCATCCCATCTCAAGACTTACGTATCCAAATTGGTCCACAAGGACCGAAGCgggtttataaaaaaatatatatatatatttatcctcGGATTAGATCCGTCGACTATTCCATATCTTCGATGCTTCATCAGAATCAACAGGTCCTTGGGCTGTATCATCTCTCCATACAGAAAAAGCTTTTACTCAACTAGAATGGCTAGATCTCTGGTCGGTCTTGAAAAATGGCTCTAATTTAATTAATATGCCAATCCCCTCAGCCATAGTTATAACAGGCAATATCTGCTCTGTTCAGAATCACTAGAAGAAGCAGACTAGGCGATCAatttctcctttgttattttaTTATCCATGGGAACCCCCTGGCCCAGGCCATTCatcaatcaaataaaataacaccAATACGCAGACGATATTGTACTATATCTAGACAATGTATCTCTATTGCTCCCAAATGCATTGAAGATCATAGATAAAAATTCAGTTTAATCTCAAATTACAAAAAATGCATCGAAACCAAATAAGCCCTACTGCCTCTCAAGATCCCGATGGAGGACTCCGTCTCTACTTacagttatagatctgtcactctCACTGAAAGCAAGTCTAGGAAgccggtagatctgttctatgtgccctatttctatgcttcccgttcttaagtttcgtacaccagcttcaaaacagacgaaaaaaatacaatatttttgtttatggaaaatatatttcacagcggtttagacggACCATGATCCTCTACACTATACTGgctggttttgtcacaaactgaaattaggtttACTGTTAGAATTTtaccaaccaggaaatggcgaagTTAATTTCTTCTTCAATGTTTTTAGTGGCAACCCACAGGTACAATGTGTGAACTAATGAATATAAAATATAGGAACAGAATATGAATTTAAATATTGGTACCTgtaacccccccaccaccacacacaaagttgctggttcaaatccctggcTGGTTCGAAGTCTGACTGGGAAACGCAATGGCTAAGGTGTTGCGTTGACAGTCTCTGGACCTGATTTGAAGTACCCGTCAGGGCCGCGGTCTCCCAAGTTTGCTGCAGTACTCTGTCTCTGTTTGATTCTAGTTGCATAGAACTTAATGCCCGACCAGTTTCTGCTTTTGAGCGCCACAGGTTCTGACTGGAGGCATTTGAGGCAGTCCTTCTTTCCAGGAACTTGGCCACTCTTTATGAACGGCATCATGCGTTTCTCTACTGCTGCTACCTCATCAACGATCCACTTTAATCTCACAATGTTGCTTTGGGTTGGCTGGGCGCCGGCTCAGCTGGGAGACAGGCCGGATGGGCGCCTGTGCGACGGGC
>TU108957
GGCTGTATCATCTCTCCATACAGAAAAAGCTTTTACTCAACTAGAATGGCTAGATCTCTGGTCGGTCTTGAAAAATGGCTCTAATTTAATTAATATGCCAATCCCCTCAGCCATAGTTATAACAGGCAATATCTGCTCTGTTCAGAATCACTAGAAGAAGCAGACTAGGCGATCAatttctcctttgttattttaTTATCCATGGGAACCCCCTGGCCCAGGCCATTCatcaatcaaataaaataacaccAATACGCAGACGATATTGTACTATATCTAGACAATGTATCTCTATTGCTCCCAAATGCATTGAAGATCATAGATAAAAATTCAGTTTAATCTCAAATTACAAAAAATGCATCGAAACCAAATAAGCCCTACTGCCTCTCAAGATCCCGATGGAGGACTCCGTCTCTACTTacagttatagatctgtcactctCACTGAAAGCAAGTCTAGGAAgccggtagatctgttctatgtgccctatttctatgcttcccgttcttaagtttcgtacaccagcttcaaaacagacgaaaaaaatacaatatttttgtttatggaaaatatatttcacagcggtttagacggACCATGATCCTCTACACTATACTGgctggttttgtcacaaactgaaattaggtttACTGTTAGAATTTtaccaaccaggaaatggcgaagTTAATTTCTTCTTCAATGTTTTTAGTGGCAACCCACAGGTACAATGTGTGAACTAATGAATATAAAATATAGGAACAGAATATGAATTTAAATATTGGTACCTgtaacccccccaccaccacacacaaagttgctggttcaaatccctggcTGGTTCGAAGTCTGACTGGGAAACGCAATGGCTAAGGTGTTGCGTTGACAGTCTCTGGACCTGATTTGAAGTACCCGTCAGGGCCGCGGTCTCCCAAGTTTGCTGCAGTACTCTGTCTCTGTTTGATTCTAGTTGCATAGAACTTAATGCCCGACCAGTTTCTGCTTTTGAGCGCCACAGGTTCTGACTGGAGGCATTTGAGGCAGTCCTTCTTTCCAGGAACTTGGCCACTCTTTATGAACGGCATCATGCGTTTCTCTACTGCTGCTACCTCATCAACGATCCACTTTAATCTCACAATGTTGCTTTGGGTTGGCTGGGCGCCGGCTCAGCTGGGAGACAGGCCGGATGGGCGCCTGTGCGACGGGC
>TU108958
ggtttataaaaaaatatatatatatatttatcctcGGATTAGATCCGTCGACTATTCCATATCTTCGATGCTTCATCAGAATCAACAGGTCCTTGGGCTGTATCATCTCTCCATACAGAAAAAGCTTTTACTCAACTAGAATGGCTAGATCTCTGGTCGGTCTTGAAAAATGGCTCTAATTTAATTAATATGCCAATCCCCTCAGCCATAGTTATAACAGGCAATATCTGCTCTGTTCAGAATCACTAGAAGAAGCAGACTAGGCGATCAatttctcctttgttattttaTTATCCATGGGAACCCCCTGGCCCAGGCCATTCatcaatcaaataaaataacaccAATACGCAGACGATATTGTACTATATCTAGACAATGTATCTCTATTGCTCCCAAATGCATTGAAGATCATAGATAAAAATTCAGTTTAATCTCAAATTACAAAAAATGCATCGAAACCAAATAAGCCCTACTGCCTCTCAAGATCCCGATGGAGGACTCCGTCTCTACTTacagttatagatctgtcactctCACTGAAAGCAAGTCTAGGAAgccggtagatctgttctatgtgccctatttctatgcttcccgttcttaagtttcgtacaccagcttcaaaacagacgaaaaaaatacaatatttttgtttatggaaaatatatttcacagcggtttagacggACCATGATCCTCTACACTATACTGgctggttttgtcacaaactgaaattaggtttACTGTTAGAATTTtaccaaccaggaaatggcgaagTTAATTTCTTCTTCAATGTTTTTAGTGGCAACCCACAGGTACAATGTGTGAACTAATGAATATAAAATATAGGAACAGAATATGAATTTAAATATTGGTACCTgtaacccccccaccaccacacacaaagttgctggttcaaatccctggcTGGTTCGAAGTCTGACTGGGAAACGCAATGGCTAAGGTGTTGCGTTGACAGTCTCTGGACCTGATTTGAAGTACCCGTCAGGGCCGCGGTCTCCCAAGTTTGCTGCAGTACTCTGTCTCTGTTTGATTCTAGTTGCATAGAACTTAATGCCCGACCAGTTTCTGCTTTTGAGCGCCACAGGTTCTGACTGGAGGCATTTGAGGCAGTCCTTCTTTCCAGGAACTTGGCCACTCTTTATGAACGGCATCATGCGTTTCTCTACTGCTGCTACCTCATCAACGATCCACTTTAATCTCACAATGTTGCTTTGGGTTGGCTGGGCGCCGGCTCAGCTGGGAGACAGGCCGGATGGGCGCCTGTGCGACGGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC105008424 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108956 False 1790 lncRNA 0.41 1 87927334 87929123
TU108957 False 1205 lncRNA 0.43 1 87927334 87928538
TU108958 True 1300 lncRNA 0.42 1 87927334 87928633

Neighbor

gene id symbol gene type direction distance location
LOC110531505 LOC106597820 coding downstream 7656 87911053 ~ 87919678 (-)
LOC110508309 LOC106600605 coding downstream 101857 87773812 ~ 87825477 (-)
LOC118966049 ehbp1 coding downstream 181245 87664667 ~ 87746089 (-)
LOC118966042 LOC106577473 coding downstream 645095 87260566 ~ 87282239 (-)
LOC118966045 LOC106577282 coding downstream 684927 87232925 ~ 87242407 (-)
LOC110531618 LOC106577176 coding upstream 100405 88029528 ~ 88053890 (-)
pex13 LOC106592834 coding upstream 125422 88054545 ~ 88065123 (-)
LOC118936685 LOC106577316 coding upstream 162921 88092044 ~ 88124727 (-)
LOC100499622 alb1 coding upstream 201915 88131038 ~ 88144466 (-)
LOC118966733 NA coding upstream 229994 88159117 ~ 88164611 (-)
G98386 NA non-coding downstream 390 87925728 ~ 87926944 (-)
G98377 NA non-coding downstream 23288 87903752 ~ 87904046 (-)
G98376 NA non-coding downstream 23908 87902563 ~ 87903426 (-)
G98375 NA non-coding downstream 24784 87902151 ~ 87902550 (-)
G98388 NA non-coding upstream 691 87929814 ~ 87930626 (-)
G98389 NA non-coding upstream 1968 87931091 ~ 87931806 (-)
G98393 NA non-coding upstream 16769 87945892 ~ 87946606 (-)
G98401 NA non-coding upstream 27522 87956645 ~ 88022962 (-)
G98421 NA non-coding upstream 50538 87979661 ~ 87979948 (-)
G97535 NA other downstream 632335 87294357 ~ 87294999 (-)
G97308 NA other downstream 1139282 86787057 ~ 86788052 (-)
G97251 NA other downstream 1304023 86566477 ~ 86623311 (-)
G97176 NA other downstream 1534245 86392561 ~ 86393089 (-)
G98510 NA other upstream 289706 88218829 ~ 88220804 (-)
G98549 NA other upstream 385153 88314276 ~ 88314696 (-)
G98616 NA other upstream 622851 88551974 ~ 88644067 (-)
LOC118966065 NA other upstream 848416 88757265 ~ 88782119 (-)

Expression


Co-expression Network