XLOC_020408 (shdb)


Basic Information

Item Value
gene id XLOC_020408
gene name shdb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21398508 ~ 21465808 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040497
ctcactcactcactagcAGACGCGTTCAGGCGAGCTTTACTGTTCTTCTCATATTCTTGTCTTATAGTGAACACACACTCTTCATCACATTATTGGCGCGTGTCTTTTTGTCCTCGTGGAATATTTTAACATTGGGAACTGCGTCTGAACTTACACGATAAATTAGCGCTGAAAAACttgttgCAGAGGTGCTGAATACTTCAACTTCGATGTCATCCATGGACCCCCTATAATTCCAGTATACTGTATATTCAAGGAAAGACCTTGTTTGAGGACCACATCTGTGCCTTTGAACTGAACTATGATGAATTCAGTACAAGGCATTCTGCTTAATTTTAGGATAAACATCTAATTTTGTCCGTAATTAAGCTTCCTGACCTTAAATTATAGGTCATTATTGGACACGTAGAGTCTTTGTGCCTTTCCAAAGAGATCAGAATGGCGAAGTGGTTAAAGGACTATTTAAGTTTTGGGAGCAAACGAGTTCCCCCGCAACCTCCGAAGCCTGATTACACGGAGAGTGAGATCTTGAAGGCGTATCGTGCCCAGAAGAATCTAGACTTTGAAGACCCTTATGAAGACTTTGAGAACAGAGGTAGAAATGACAACGGATCGAATGAAGTGTCTCACACAGGCTTCGGTTCTCCCATGAAATCCTCAAGTTTGGATATCAAAGTTGTCTCGCCAAAGCATCGACTCATAAAAGTGGATTCGCAAGACCTGGGACGGAGCAAGATTCTCCTGAGCTCTGTGTCTTTAGAGGAACCGACAGATCCGGTGGTTCCATCAGCTCCAGTTATGGGCGATACTGACTACTCTGACCCATTCGATGTTCGTTTGGACCCGCGTCCAGAATCCGCCCAGGGCCAGATCACTCCTGAGAACAATGGCTACATGGAGCCCTACGAGGCCCAGAAAGTGATAACAGAGCTGCAGAGGAGAGCAGGTGGTGGAGCAGGAGGCTGGGGAAGAGGGGAAGTCCAGCTCTATGACACCCCATATGAAGAACGCGTCCCAGGACAGCCGGATTTGCCAGAGGAGGGCAGGGAAAGCAGGCTGCCGCAGGATGATGATAGGCCCGCAGATGAATATGACCAGCCGTGGGAGTGGAAGAAGGAGCACATCTCCAAAGCTTTCGCAGTGCAGTTTGAGGGTGCCGAGTGGGATCGTTCCTGTTCTCCCACTGAACGCCTGAGGTGCTCCAGGGCTCCGCCGACCACAGGCAGCATGAAGCTCCGCAAGCCCAGTGATCCTCATTCCATGATTGGAGAGAGAGTGGATCCCTCCCTGCCCCTGGAGAAACAAGTATGGTATCATGGCTCTCTGTCTCGTTCAGAAGCCGAGTCTCTGTTGACCCTCTGTAAGGAGTGCAGTTATTTGGTGCGAAACAGCGAGACCAGTCGCCTGGACTATTCACTCTCGCTGAGGAGCTGCCAGGGTTTCATGCACATGAAGTTCAGCCAGTGCAAAGACGGCCGCTATATCCTTGGCCAGAACAGCCCTCCATTTGAGACCATTCCTGAAGTGATCCACTATTACACCACACACAAACTCCCTATCAAAGGAGCCGAACACTTGTCCCTGCTCTTCCCCGTGTTGGTTCAAACTCTCTGATTGGTGAAGAGCACTGCAGTCCTCATTGCCATTGATGAAAGTCATTCTTGGATAAACATTCAACAAATTTAGCATCTACTTTTGGGTCCTACTTGTTTTTGATTGTAAAATGGCATTTGGCTGAGAATGTGAACCTTTTAGAAAGGACATGTCAGATCAAATTACAGTTTGATCTGTTCACATGGCTTTTCATATTCTTGTTAATAACACTTTTTCCATTTCATCAAATGACCTTTCTGTGAACCGGACCAGACTGGTGGCAGCCAGACCTGTTGCTTGTTTTCAGTCATCTGCCTGTGTTGTTCTCCATTGGGATGGTAGATTAGCTGTCGCTAATGTTTGTTGATCGATTAGCAGCCCCTTAGGATGAGCAGACGGGTCTCCTCTCTTTTATAGctgctgtaaaacacattttcactcagAGGTTTATGACTATTATCCTctcttttaaatttgtaaagCCTTTTGGTTCTACGGAGACCCTTGAGACCACACATGAATGTTGTTTGGGTTACTCAAGACAGTATTCCTCAGAAAATCATGTTAATACTTATGTTGTTGTTTGATCTTACCTTTTAATGTTGAGGACAGTAGCTGAAACCAACTCATCAATGACCGATGTGAGTGTTGACTTATGATCATATGCAGAGTTGTTCTTCTTAATGGTACGTTAGGTCACAGATGAAGTAAAATGCGGAAAATGTGTTTCTTTAGCTGCTGTTTTAAACTGATTTACATGTTGTATAATAAACTATCTAATGAGAAAGAA
>TCONS_00040498
actagcAGACGCGTTCAGGCGAGCTTTACTGTTCTTCTCATATTCTTGTCTTATAGTGAACACACACTCTTCATCACATTATTGGCGCGTGTCTTTTTGTCCTCGTGGAATATTTTAACATTGGGAACTGCGTCTGAACTTACACGATAAATTAGCGCTGAAAAACttgttgCAGAGGTGCTGAATACTTCAACTTCGATGTCATCCATGGACCCCCTATAATTCCAGTATACTGTATATTCAAGGAAAGACCTTGTTTGAGGACCACATCTGTGCCTTTGAACTGAACTATGATGAATTCAGTACAAGGCATTCTGCTTAATTTTAGGATAAACATCTAATTTTGTCCGTAATTAAGCTTCCTGACCTTAAATTATAGGTCATTATTGGACACGTAGAGTCTTTGTGCCTTTCCAAAGAGATCAGAATGGCGAAGTGGTTAAAGGACTATTTAAGTTTTGGGAGCAAACGAGTTCCCCCGCAACCTCCGAAGCCTGATTACACGGAGAGTGAGATCTTGAAGGCGTATCGTGCCCAGAAGAATCTAGACTTTGAAGACCCTTATGAAGACTTTGAGAACAGAGGTAGAAATGACAACGGATCGAATGAAGTGTCTCACACAGGCTTCGGTTCTCCCATGAAATCCTCAAGTTTGGATATCAAAGTTGTCTCGCCAAAGCATCGACTCATAAAAGTGGATTCGCAAGACCTGGGACGGAGCAAGATTCTCCTGAGCTCTGTGTCTTTAGAGGAACCGACAGATCCGGTGGTTCCATCAGCTCCAGTTATGGGCGATACTGACTACTCTGACCCATTCGATGTTCGTTTGGACCCGCGTCCAGAATCCGCCCAGGGCCAGATCACTCCTGAGAACAATGGCTACATGGAGCCCTACGAGGCCCAGAAAGTGATAACAGAGCTGCAGAGGAGAGCAGGTGGTGGAGCAGGAGGCTGGGGAAGAGGGGAAGTCCAGCTCTATGACACCCCATATGAAGAACGCGTCCCAGGACAGCCGGATTTGCCAGAGGAGGGCAGGGAAAGCAGGCTGCCGCAGGATGATGATAGGCCCGCAGATGAATATGACCAGCCGTGGGAGTGGAAGAAGGAGCACATCTCCAAAGCTTTCGCAGTGCAGTTTGAGGGTGCCGAGTGGGATCGTTCCTGTTCTCCCACTGAACGCCTGAGGTGCTCCAGGGCTCCGCCGACCACAGGCAGCATGAAGCTCCGCAAGCCCAGTGATCCTCATTCCATGATTGGAGAGAGAGTGGATCCCTCCCTGCCCCTGGAGAAACAAGTGTACGTCCAACATCTTACCACAAACTATTAGAGCTTTCAACGTGAACACAAGCTAAGAAAATGCTGTTTCATAAGAAATGTTATTTGCTGAAGTTCCAAACCTGTATTTACTTGCTTCTGTGGAACTTTTTGGTTCATATAGTGAAAGTGAATGAAGTTCAAAACATTCAATATAAAAGTCATACCGGTTTGGAAGG

Function

symbol description
shdb Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including nervous system; pectoral fin musculature; segmental plate; solid lens vesicle; and tail bud. Orthologous to human SHD (Src homology 2 domain containing transforming protein D).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0001784 phosphotyrosine residue binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6059 Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including nervous system; pectoral fin musculature; segmental plate; solid lens vesicle; and tail bud. Orthologous to human SHD (Src homology 2 domain containing transforming protein D).

Ensembl:

ensembl_id ENSDARG00000062109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040497 False 2383 mRNA 0.45 7 21398508 21465808
TCONS_00040498 True 1493 mRNA 0.47 5 21398519 21446715

Neighbor

gene id symbol gene type direction distance location
XLOC_020407 shc2 coding upstream 47039 21317597 ~ 21351469 (+)
XLOC_020406 odf3l2b coding upstream 86968 21305682 ~ 21311540 (+)
XLOC_020405 cpamd8 coding upstream 94261 21252790 ~ 21304247 (+)
XLOC_020404 crlf1b coding upstream 233316 21152847 ~ 21165192 (+)
XLOC_020403 NA coding upstream 257389 21134709 ~ 21141119 (+)
XLOC_020409 mier2 coding downstream 50881 21516689 ~ 21547857 (+)
XLOC_020410 plpp2b coding downstream 83611 21549419 ~ 21584670 (+)
XLOC_020411 tle2a coding downstream 152313 21618121 ~ 21667832 (+)
XLOC_020412 NA coding downstream 203357 21669165 ~ 21766839 (+)
XLOC_020413 NA coding downstream 320971 21786779 ~ 21787648 (+)
XLOC_020402 CU693455.2 non-coding upstream 304543 21093851 ~ 21093965 (+)
XLOC_020399 NA non-coding upstream 824548 20571834 ~ 20573960 (+)
XLOC_020395 NA non-coding upstream 964491 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 1065674 20312803 ~ 20332834 (+)
XLOC_020414 NA non-coding downstream 323288 21789096 ~ 21797741 (+)
XLOC_020415 NA non-coding downstream 357151 21822959 ~ 21823227 (+)
XLOC_020416 NA non-coding downstream 382478 21848286 ~ 21852131 (+)

Expression


Co-expression Network