XLOC_020409 (mier2)


Basic Information

Item Value
gene id XLOC_020409
gene name mier2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21516689 ~ 21547857 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040499
TAAGTTCAATAGGAGTTCTACACAACATCCGGGCATTCCACCGCTTGCGCAGAATCGGAATGGCGGAGTTCGAATGGGCTCCAAAGACCAACGGCACAGTCGTGTAGACATTTTCCACCAGGGCTATGTGGGGCCACTGGAGGCCCTTCCCCGGGCAACCACGTTCCTAGAGGAGGACAGGAGCCTGGTGGCTCTGCGGAGGCAGGCGGTGAAGATGGCAACCAAGTCCCAGGCAGGTGGTGAGATGTCTCTTGAGCAACTACTGGCACTTTATGGGTACAAAATGCCTGATCCTGTCCTGCAACAACAGGAGCCGAATGAGCTGGCAGCCAGTCTGCCTGAAATCACACTGGACAAGGTTCAGATACATAAAGACCTGCTCTCTGGAGGGGAGGATGTGGACAACCATTCCTCTGCTGATGACCTCACACTCACCATCAAGTCCCATGCATCTGACCTCTTACAATGTCACCTAAGAGGTGATGACAAAGACACTTCAGTTAGCTGTTCCGAAGATGACTCAGAAAGCACCTCCATCCCCTCCAGTGATGGCCGcaaaGATATCATGGTGGGGCCCCAGTATCAGGCTGTAATACCTTCTCTCTGTACACAAAGTTTTTATGAAAGAGCTTATGAAAATGAGGACCAGTTAGTGTGGACCCCAGACGTGATGTCCAGTCTGGCTGTAGAGAAATTTTTGCTTGATGCCCAGAGAAACGGGAGCGACAGTGGACCTACAAACACTTTGACCACTGGAGATAAAGTCAAAGACAATGAGCAGGCTCTTTATGAACTAGTGAAATGCAACTTTAATGCAGAAGAGGCACTAAGACGATATCGCTTTAATGTTAAGGTATTCAATGAGGAGCTTTGTGGCTGGAGTGAGGAGGAGCGTCGTTACTTTGAGCATGGTTTCCGTGCCCATGGGAAGAACTTCAACCTCATACAGGCCAATAAGGTCCGCACACGCTCAGTGGGTGAGTGTGTTGAGTACTACTACATGTGGAAGAAATCAGAGCGGCATGAGTATTTCACACAGCAGGCCACCAAGCTGGGTCGAAAAAAGTGCAATCTGCCATCTGGGAATAtAGAGGATACTGAGCCAGATGGAGATACTGGTGATGTGGAGGTTGCCACACAGGGTTTGCCAACCAGGTCTTCCATTCAACTCCAAACTCCATCGCCACCTACAGTCATGGAGCTGAATAAACAAGAGGAGAGCCTGAATTGTGCAGCTCAGTTTCAGGGTCGTCCACGCCGGAAACGCACACCACGCTTCCTGTTAAAGCCCTGAGCTTGCTGCTCACTGACAGCCTAAAACTGACAGACACACAGCTTGTGAGCGAAACATTGGGGAGATTGACCTGTGTGCAGGTTGTTGCTCTGGCCCACAGGGGGAGCAGTTGTTCAGCCAGTTTACTCTTCCTCCAGTGCTCCAGATGCCAGACGTGGTCTCCCTATCCACCCAGCTTTACTTCTCCCAAATCTCCCGAAGACACTCCGTCCCATCATCCCACCTGACTCAGGGCTCCTGGGAGCAGGGTTTTACAAGCTTCAACTCGGGTCTTTTGCTGACGATCCTGCACCTTCCTGCTCAGAGTGTGTTGCTTCACCGAAGCTTCAGTTTGACTTTTCTTTACCTTCCTCACCATCCGTCCTAGACTTTGGTGTGATTAGTAGTCCATCTTCCTCCATCTGCTCGACACAACAATGAAGGAAAAACATTCCACATCTAAGGAAAAGTGACGACTGTCGTTCACTTGGAAAAGAAAAATGTTCACTCTTCAGGAGTTTTCAGCATCTTTGGTCATCATTTAATCAGCTTCATAATACTCCAAAGTTTGACTTCTTTCTGAGGTACacgaaatatattttttaaactactaTTGTGTGtgtacaatagaagtcaatggggtccATAATGCTAAAGATTAAATTACATTAAGATAGCATACATTTGGCAGCATATGGATTACTTACAAGTTTTTGTGCTGTAAAAATTTCAGAACACATTGTGGACCCCGATGACTTTAATTCTAAAAGAAACTTTTGGACCCCATCGAATTTCATTAGAAGTGTTTGGACTCCATTAACATTCAGAAAGTCATACTGGTTTGGAATGAAATAGTAAATACTTAAAGTTTTTGTGTTGGCTATCTTTTCAATCAAAGAGTGTCATCAGCATTTCCTCATGACGTCAAAATCCATGTTGTCTTCAACAACAAAACTAAAGGAATGTGACTGCTGTTGTTTCCTCTGAAATTGCACGTGTTGCTCTTCAGTAAAACCTGAATTTAATGAGATGTTTTGACAAAACCCAAACCATATTTTTTCCGTACAATAAAAGTCATCAGAGTCCAAAATGCtagcatacattttcatttttaaaagaatcTTTAAGACCACGTtgatttttagtaaaaaaaaaaaaagacttttggaCCCCGTCAGTTTTCAGGTTTGGAATGAAATAATTCTGCTTTTTTGATTTATATTTCTTTGTTCCAGgaatcttttaaatgtttttccgcATTCAGAGCTGGTTGTTTTCAACTAAACTAAGAAAACGTGACAACTGCTGCTCACCTGGAAATTTTAGTGGACCCCACTGAAGTGCAATGTAAAAGAAAGAGCTTTGGgtccattgactttaatagtaatGGCATATATTTGGCAACATATGGATTACTTTTATTCTACCTTTATGTTTATGAAaccttttttaaagaaacttttgGACAtcattaacttaattttttttttttatataatcttTTGGACCCCGTTGATTTTTAGCATAAAAAGACATCAGGTTTGGAATGAAATGAGTAAATTGATTTACTTTTCTTTTTCCCATAAATCTTTTGAATGTTTCAAATGTTTCTCCGCATTCACAACAGGTTGTTTTCAACTAAACTAAGAAAACGTGACAACTGCTTCTAAACCTGGAAATTGCAGAAAAGCCTGAGAGAGAGTTTAGCCAAATAAGATAGCTTGACCATTAAAATGGCCTTGTGTTGTCTTTAACCTGTTGAGTTGTTTTAGCAGATTTTTGTCCATTCAAACCAAGTCAATGGGGTCCAAAACGTTTAAGCTCTAACAATTAGAAAAAGATAGCATAAAAATAATCCACACTCTACCAAAAGGGTACTAGCATACTAAATACTAGAGCTTTGGACCCCACTGAAgtgcaatgtaaaataaaaagctttgggtccattgactttaatagtaatGGCAAATATTTGGCTGCATATGAATTACTTTTATGCTACCTTTATGTTTATGAAACCttcttttttaaagaaacttttagacattattaacttaattttttttaaataacctttTGGACCCCCTGATTTTTAGTATAAAAAGACACTTTCGGACCTCGTCAGTTTTCAGGTTTGGAATGAAATAATTCTGCTTTTTTGATTTACGTTTGTTTTGATTATCCCttaaatcttttaaatgttttaaatgtttctccaCATTCAAATCTGGTTGTTTTTAACTAAACTAAGAAAACGTGACAACTGCTGCTCACCTGGAAATTGCAGAAAAGCCTGAGAGATAGTTCAGTCAAACACATTAAATCACCCTTgtgttgtttcaaacctgttgaCTTGTATTAGCAGATTTTTGTCCATTCAATGGAAGTGAACGAGGTCCAAAACGTTTAAGCTCTAACAATTAGAAAAAGATAGCATAAAGTAATCCACACTCTACAAAAAATGTACTACCATACTAGAGCTTTGGACCCCACTGAAGTGCAATGGAAAAGAAAAACCTTTGGGTCCATTGACCTTAATAGTAATGGCTTATATTTGGCAGCATATGGATTACTTTTCTGCTACCTTTATGGTGCTCACGTTTTAACACCAATGTACTTTAATAGTAAAAGGAAGCTTTTGGACCTCACTGACTTTCAGAAAGTCCTTCAGGTTTGAAACAAAATGAGGTAAAAACGTCtttgattaatttgttttgtgtgttattgATCTCAAGGAATGTGTTCAAAAGTTATTCATGtcatttactccatgtagttttCACCTACTCATCTGAATGGGTGTTTTAGGGAACTGACTGTCTCTGTCAGATTACTACATGCAATGAAAGTGTTAACTACCTAATTTTAGGCTTTGGAAATATGCAAGGACTTAAATCCTGCTGGGATGTTCGATGGTCTCAATAAGGATAGTTTTGGTACCTGTTTGATAATAGTTGTTCCTGTACAGTAAATAGTTTCTTTCATTGCATGTAGCACATTTAAactcaactcttttttttttttaaatgccttatTTTTTTCAAAGAATAAAAGGTTTTACTCGTATCATCAGGAATGAACTACTAATGCAGTCATGTTGTGCTGTCGTTTGTTGCGATACCTGTTATGAGGTTCGAGCTTTCCCATTGTAGAAAACTTCTCTGTGCAATaaacacaaaaagaaagaaaaaagtacaaGTTCCTCAGGGGCTTTGATCGTTTCCCTCTCGGTCTAGTCCGTCAGTACTTCAGTACTAAGTGTTGAAGAGGGTTTTTGAATGGTTTATGCCAATAAATGTCATCCTGATATTAGTGGTTAAGTTTCTCAGGTtttgctgccaattcatttgcgTGAAGCCACAACTTGTCAGAACCCAGAATCTTTCTTCACTGTTTGGAGAAACTGGCACTGCCAAATCTAGCGTAGTGCCTCTTTTGTGACTTGACTTTTTGTAAAGCATCacatatcatcatcatcatcatcctggtCACATTAATCGCTCAGATCAGTGTGTTTGCTAATTGTTTAGTCGGCTTTAAGTTTTGTGTGTAGTTTACACAAGGTTCAGAAGATACGAAAGGGAGACAAACACTGCTTTGACTTACTTTACCCTTTTAAAGCAATTTATGTATTATTGCTCCTGTTATGATGATTTATTGTCCCtgttattatattttgtaaataataataaaaatttgaaaacaaa
>TCONS_00040500
GCTTGCGCAGAATCGGAATGGCGGAGCAGTTCGAATGGGCTCCAAAGACCAACGGCACAGTCGTGTAGACATTTTCCACCAGGGCTATGTGGGGCCACTGGAGGCCCTTCCCCGGGCAACCACGTTCCTAGAGGAGGACAGGAGCCTGGTGGCTCTGCGGAGGCAGGCGGTGAAGATGGCAACCAAGTCCCAGGCAGGTGGTGAGATGTCTCTTGAGCAACTACTGGCACTTTATGGGTACAAAATGCCTGATCCTGTCCTGCAACAACAGGAGCCGAATGAGCTGGCAGCCAGTCTGCCTGAAATCACACTGGACAAGGTTCAGATACATAAAGACCTGCTCTCTGGAGGGGAGGATGTGGACAACCATTCCTCTGCTGATGACCTCACACTCACCATCAAGTCCCATGCATCTGACCTCTTACAATGTCACCTAAGAGGTGATGACAAAGACACTTCAGTTAGCTGTTCCGAAGATGACTCAGAAAGCACCTCCATCCCCTCCAGTGATGGCCGcaaaGATATCATGGTGGGGCCCCAGTATCAGGCTGTAATACCTTCTCTCTGTACACAAAGTTTTTATGAAAGAGCTTATGAAAATGAGGACCAGTTAGTGTGGACCCCAGACGTGATGTCCAGTCTGGCTGTAGAGAAATTTTTGCTTGATGCCCAGAGAAACGGGAGCGACAGTGGACCTACAAACACTTTGACCACTGGAGATAAAGTCAAAGACAATGAGCAGGCTCTTTATGAACTAGTGAAATGCAACTTTAATGCAGAAGAGGCACTAAGACGATATCGCTTTAATGTTAAGGTATTCAATGAGGAGCTTTGTGGCTGGAGTGAGGAGGAGCGTCGTTACTTTGAGCATGGTTTCCGTGCCCATGGGAAGAACTTCAACCTCATACAGGCCAATAAGGTCCGCACACGCTCAGTGGGTGAGTGTGTTGAGTACTACTACATGTGGAAGAAATCAGAGCGGCATGAGTATTTCACACAGCAGGCCACCAAGCTGGGTCGAAAAAAGTGCAATCTGCCATCTGGGAATAtAGAGGATACTGAGCCAGATGGAGATACTGGTGATGTGGAGGTTGCCACACAGGGTTTGCCAACCAGGTCTTCCATTCAACTCCAAACTCCATCGCCACCTACAGTCATGGAGCTGAATAAACAAGAGGAGAGCCTGAATTGTGCAGCTCAGTTTCAGGGTCGTCCACGCCGGAAACGCACACCACGCTTCCTGTTAAAGCCCTGAGCTTGCTGCTCACTGACAGCCTAAAACTGACAGACACACAGCTTGTGAGCGAAACATTGGGGAGATTGACCTGTGTGCAGGTTGTTGCTCTGGCCCACAGGGGGAGCAGTTGTTCAGCCAGTTTACTCTTCCTCCAGTGCTCCAGATGCCAGACGTGGTCTCCCTATCCACCCAGCTTTACTTCTCCCAAATCTCCCGAAGACACTCCGTCCCATCATCCCACCTGACTCAGGGCTCCTGGGAGCAGGGTTTTACAAGCTTCAACTCGGGTCTTTTGCTGACGATCCTGCACCTTCCTGCTCAGAGTGTGTTGCTTCACCGAAGCTTCAGTTTGACTTTTCTTTACCTTCCTCACCATCCGTCCTAGACTTTGGTGTGATTAGTAGTCCATCTTCCTCCATCTGCTCGACACAACAATGAAGGAAAAACATTCCACATCTAAGGAAAAGTGACGACTGTCGTTCACTTGGAAAAGAAAAATGTTCACTCTTCAGGAGTTTTCAGCATCTTTGGTCATCATTTAATCAGCTTCATAATACTCCAAAGTTTGACTTCTTTCTGAGGTACacgaaatatattttttaaactactaTTGTGTGtgtacaatagaagtcaatggggtccATAATGCTAAAGATTAAATTACATTAAGATAGCATACATTTGGCAGCATATGGATTACTTACAAGTTTTTGTGCTGTAAAAATTTCAGAACACATTGTGGACCCCGATGACTTTAATTCTAAAAGAAACTTTTGGACCCCATCGAATTTCATTAGAAGTGTTTGGACTCCATTAACATTCAGAAAGTCATACTGGTTTGGAATGAAATAGTAAATACTTAAAGTTTTTGTGTTGGCTATCTTTTCAATCAAAGAGTGTCATCAGCATTTCCTCATGACGTCAAAATCCATGTTGTCTTCAACAACAAAACTAAAGGAATGTGACTGCTGTTGTTTCCTCTGAAATTGCACGTGTTGCTCTTCAGTAAAACCTGAATTTAATGAGATGTTTTGACAAAACCCAAACCATATTTTTTCCGTACAATAAAAGTCATCAGAGTCCAAAA
>TCONS_00040501
AGGGAATCACACAGCTGCAGTAGTTCCAGGCAGGTCTTGACTGCATTACAGTTCCATATCACTATAGCAGTTCGAATGGGCTCCAAAGACCAACGGCACAGTCGTGTAGACATTTTCCACCAGGGCTATGTGGGGCCACTGGAGGCCCTTCCCCGGGCAACCACGTTCCTAGAGGAGGACAGGAGCCTGGTGGCTCTGCGGAGGCAGGCGGTGAAG

Function

symbol description
mier2 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human MIER2 (MIER family member 2).

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-795 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human MIER2 (MIER family member 2).

Ensembl:

ensembl_id ENSDARG00000071413

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040499 False 4980 mRNA 0.40 13 21516689 21547857
TCONS_00040500 False 2324 mRNA 0.46 13 21516731 21545240
TCONS_00040501 True 216 mRNA 0.57 2 21518528 21527650

Neighbor

gene id symbol gene type direction distance location
XLOC_020408 shdb coding upstream 50881 21398508 ~ 21465808 (+)
XLOC_020407 shc2 coding upstream 165220 21317597 ~ 21351469 (+)
XLOC_020406 odf3l2b coding upstream 205149 21305682 ~ 21311540 (+)
XLOC_020405 cpamd8 coding upstream 212442 21252790 ~ 21304247 (+)
XLOC_020404 crlf1b coding upstream 351497 21152847 ~ 21165192 (+)
XLOC_020410 plpp2b coding downstream 1562 21549419 ~ 21584670 (+)
XLOC_020411 tle2a coding downstream 70264 21618121 ~ 21667832 (+)
XLOC_020412 NA coding downstream 121308 21669165 ~ 21766839 (+)
XLOC_020413 NA coding downstream 238922 21786779 ~ 21787648 (+)
XLOC_020414 NA coding downstream 241239 21789096 ~ 21797741 (+)
XLOC_020403 NA non-coding upstream 375570 21134709 ~ 21141119 (+)
XLOC_020402 CU693455.2 non-coding upstream 422724 21093851 ~ 21093965 (+)
XLOC_020399 NA non-coding upstream 942729 20571834 ~ 20573960 (+)
XLOC_020395 NA non-coding upstream 1082672 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 1183855 20312803 ~ 20332834 (+)
XLOC_020415 NA non-coding downstream 275102 21822959 ~ 21823227 (+)
XLOC_020416 NA non-coding downstream 300429 21848286 ~ 21852131 (+)

Expression


Co-expression Network