G98505


Basic Information

Item Value
gene id G98505
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88223331 ~ 88224678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU109107
AGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGACAACAGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaggagCGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggagggctggaggagTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGGCGACAGGAGGAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG
>TU109108
TCAGGGTAAAAAATAGCACAGTGAGGAAATAGACTCCTTGACTCACTTTCCACCATATTGCTTTCCCCGTGTTGTGAAAATGTGAATTTCTATCTTCAGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGACCATCAGACAACAGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggagggctggaggagCGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggagggctggaggagTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGgcgacaggaggagaggagggctggaggagCGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggagggctggaggagTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGGCGACAGGAGGAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG
>TU109109
AGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGACAACAGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG
>TU109110
AGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGACAACAGGAGGAGTGGAGGAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG
>TU109111
AGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGACAACAGGAGGAGTGgagggctggaggagCGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggaggagaggagggctggaggagTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGGCGACAGGAGGAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG
>TU109112
TCAGGGTAAAAAATAGCACAGTGAGGAAATAGACTCCTTGACTCACTTTCCACCATATTGCTTTCCCCGTGTTGTGAAAATGTGAATTTCTATCTTCAGGAGACTTGATATTCACCGTGAACTCTACTACCAAAATTCCTACCAACCCTGTGCTAAACTATACTAGGCCATCAgacgacaggaggagaggaggagggctggaGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAgacgacaggagaggagggctggaggagTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCATCAGGCGACAGGAGGAGGGCTGGAGGAGTGGTGTCCTGAACTCTACTACCAACCCTGAGCTAAACTATACTAGACCatcagacaacaggaggagaGCGTCATCACTCCCTACGGTGATGCCGTGATTCTGTTGTTTAGAAGAGGAAGAAGGATAAATAGATATCTAGTCTGCCATGGGGGaggaaaccgtgtgtgtgtgtgttttagacatACACCATTCTAGGTGCTTCTCTATGATGACCCTTCAGTGTTTGGGTGAATAtatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatgtgtgtgtgtgtggtcattaaCATTGCGGAGGTCTTTATCTGACAGTGACTCCCAGTTTCTCCAGCACCCTGACACCTTTCTCCTGGTACTCCTCCCTGGTCAGCCAGAAGTTATCTTTGTCCTTCATGATGTCCGCCAGCACGGCCCCGCCCAGGAACACCATGTGCTTACGCCGTGGCGGGTCCTCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109107 False 1090 lncRNA 0.51 2 88223331 88224581
TU109108 False 1073 lncRNA 0.49 3 88223331 88224678
TU109109 False 931 lncRNA 0.50 2 88223331 88224581
TU109110 False 865 lncRNA 0.50 2 88223331 88224581
TU109111 False 1021 lncRNA 0.51 2 88223331 88224581
TU109112 True 863 lncRNA 0.49 2 88223331 88224678

Neighbor

gene id symbol gene type direction distance location
papolg papolg coding downstream 21173 88178952 ~ 88202158 (-)
LOC118966733 NA coding downstream 58720 88159117 ~ 88164611 (-)
LOC100499622 alb1 coding downstream 78865 88131038 ~ 88144466 (-)
LOC118936685 LOC106577316 coding downstream 98604 88092044 ~ 88124727 (-)
pex13 LOC106592834 coding downstream 158208 88054545 ~ 88065123 (-)
LOC118966057 NA coding upstream 3210 88224741 ~ 88230342 (-)
LOC118966058 NA coding upstream 7263 88231941 ~ 88234672 (-)
LOC118936686 LOC106594327 coding upstream 11903 88236581 ~ 88270980 (-)
LOC118966063 NA coding upstream 490195 88714598 ~ 88715755 (-)
LOC118966064 NA coding upstream 491640 88716318 ~ 88717077 (-)
G98502 actr2a non-coding downstream 11130 88210961 ~ 88212201 (-)
G98501 NA non-coding downstream 18722 88204290 ~ 88204609 (-)
G98499 NA non-coding downstream 25400 88197610 ~ 88197931 (-)
G98488 NA non-coding downstream 56019 88165837 ~ 88167312 (-)
G98478 NA non-coding downstream 109049 88111666 ~ 88114282 (-)
G98514 NA non-coding upstream 13322 88238000 ~ 88238331 (-)
G98522 NA non-coding upstream 29068 88253746 ~ 88254060 (-)
G98528 NA non-coding upstream 38795 88263473 ~ 88264499 (-)
G98510 NA other downstream 2527 88218829 ~ 88220804 (-)
LOC110531505 LOC106597820 other downstream 307431 87911053 ~ 87919678 (-)
G97535 NA other downstream 928332 87294357 ~ 87294999 (-)
G97308 NA other downstream 1435279 86787057 ~ 86788052 (-)
G98549 NA other upstream 89598 88314276 ~ 88314696 (-)
G98616 NA other upstream 327296 88551974 ~ 88644067 (-)
LOC118966065 NA other upstream 552861 88757265 ~ 88782119 (-)
G98878 NA other upstream 851169 89075847 ~ 89076238 (-)
ghitm LOC100136239 other upstream 998472 89223150 ~ 89270371 (-)

Expression


Co-expression Network