XLOC_020411 (tle2a)


Basic Information

Item Value
gene id XLOC_020411
gene name tle2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21618121 ~ 21667832 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040503
CTAAAATGAGTGTAACTTGAGAATTTAACCCTTTGCTTCTTGTTACCACAAGCCaagccctctctctctctctctctctttttttttttttttgcacgggGGGGCATGCGTTTCTCTTGAAGAAAACAACTCGCATGTCCCATTGAAAAACAGCTGAGGATCCGAAAGGAAGGAGCGgatgaggagagagagagagagagaaagggagagagagacaagCAGACAAAAGAAGCTGCGGCTGCGTTGAGTGTCGCGTCTTGGGAGCACGATAGCTGGCCATCCACTTGGTTTCTTTATCATTTTCATTAGTAAAGCACATCAAGGGCGGGGGAGCTCTGAAGGCCGAGCGCGTGCATTCTGATATTTCGAGGTGCATCGTATTGAGGGACTCGATACCGGACTGGGCGCATCTTGTATCGCGCGATAAAGCAGAACAAAGGGAGTCTTGAGCGAGGAATGCGCGAGCCGAGCCTGGCGCCGCCGAAACAGGGCCAAATGTTCTTCTGAGACCTGGAGAAAGGCGCAAAGTCTCTCGAAACATCATTTAACACAGCATCGAAACAGACGATTCTCAAACCGCAACAAACCACGCTATTCACCATGTTTCCCCAGAATCGACCTCCGGCTCCATTGCAACCTCCACCAGGATCCTCAGCTTCagctgcagcagcagcagctgcggCCGCTGCTGCATCAGGGTCAACACAACCTCTGAAACTCACTTACCCTGAGACCCTAGACCGCATAAAGGAGGAGTTTCAATTCCTGCAGACACAGTATCACAGTTTGAAGTTGGAGTGTGAAAAGCTGGCCACGGAGAAGACAGAAATACAGAGACATTATGTCATgtacTATGAAATGTCCTACGGCCTCAACATAGAGATGCACAAACAGACGGAGATCGCCAAGCGGCTGAATGTGATTTGTGCCCAGCTCATTCCATTCCTGTCACAGGAGCACCAGCAGCAGGTGGTCCAGGCCATGGAGCGCGCCAAACAGGTGACTATGGGGGAGTTGAATGCGTCGATAGGGGTACGTGGACTCCCCCCTCTGCCTCCCACACAACAGCTGCAGGCCCAGCACCTTTCTCAGCATGCTGCCCAGGGGTTACCCATGGCCCCTCACCCCTCCGGCTTGCCTCACCCAGGATTGGCTTTGGGGGGCGGCTCCGGGCTGCTGGCCCTTTCTGGAGCTCTCGGGGCCCAGTTGGCCTCTAAAGACGAGCGAGCCCATTTGGAGGCCGTGGCAGCGGCGGCCGCAGCAGAGCACCACAGAGactGGCCGCGGGGACGTTTACCTGCTCTTCCCATGATCCCCATAGACCGTGAACCTGGACCAAGTTCACTCTCAAACGGAGACAAAGGGAGGTCCTCAGACTACCTCAGCAATGGAAAAAAGAGAAAAGCAGATGAGAAGGAGTTTATGACCGACTATGGCAGCGACGCGGAAAAGAGTGATGACAATTTGGTTGTTGATGAGGACCCTTCTTCGCCAAGAAGCGTGCAGTCGTACTCCTCAAGAGAGAACGGATTAGATAAACTTCCCCCTTCCCGTAAGGAGCCTCTGCCCCAGGCCAGTCCGACCTCGCTGGCTTCCTCCAGCAGTGCTGCTTCCCCTTCACGCAGCAAGGAGCCTCCACCGAGAGAGAAGTCCAGCACTCCAGGGATGAAGCCTGGAACGCCCATGTCCCAGGAGTCGTCCACTCCAGGCCCCAGCGTTCCTCCACAGTTTCGTCCTGTTCCTGGGAAACCAGGGGTTGACCCTCTTGCATTGGGTCTAAGGAATCCGTTGGCAGTTCAGGGCGCATATCCCCCTGGTGCATTTGGTCTTCCTCCTCCGGGAGTTAATGGTGAGTTGGCTGGAGCTGCGGGATATGGTGCTGGTCTCCACCTCGTCTCCCCTCAGATGAACGGGTcggctgctgctgctgccgcTGCTGCTGCCGCCGCTGCAGGATATGGACGTTCACCTGTGGTGGGCTACGAGTCTCCTCACCCTCATATGAGAGTTCCAGGGTTACCGGGTAGCCTGCAGTCAGCAGCTACGGGAAAACCTGCTTACTCGTTCCATGTGAGCGCAGATGGTCAAATGCAGCCGGTGCCCTTTCCTCCTGATGCCCTCCTCGGCCCTGGCATCCCACGTCATGCTCGTCAGATCCACACTCTGAGTCATGGAGAGGTGGTGTGCGCAGTCACCATCAGCACCTCCACACGCCACGTCTACACCGGTGGCAAAGGTTGTGTCAAAGTATGGGACATCAGCCAACCAGGCAGCAAGAGCCCGATGGCCCAACTGGACTGTTTGAATCGAGACAACTACATCCGCTCATGCAAGCTTCTTCCAGATGGGCGGACCTTGATAGTTGGGGGCGAGGCCAGCACACTGTCTATCTGGGACTTGGCCACACCCACTCCACGCATCAAGGCTGAATTGACGTCCTCGGCTCCGGCCTGCTACGCTCTGGCCATCAGTCCGGACAACAAGGTCTGCTTCTCCTGCTGCAGTGACGGAAACATCGTAGTCTGGGACCTGCACAACCAGACACTCGTCAGGCAGTTCCAAGGCCACACAGATGGAGCCAGTTGTATTGATATTTCTAATGATGGGACCAAATTGTGGACGGGAGGTCTGGACAACACTGTACGCTGCTGGGACCTGAGAGAGGGGCGACAGCTGCAGCAGCATGACTTCACATCACAGATCTTTTCTCTGGGTTACTGTCCCACGGGCGAGTGGCTTGCAGTGGGGATGGAGAGCAGTAATGTGGAAGTGCTGCACGTCTCCAAACCAGACAAATACCAGCTACACCTTCATGAAAGCTGCGTTCTCTCGCTCAAGTTTGCCTACTGTGGTAAATGGTTTGTAAGCACAGGCAAAGATAATCTACTGAATGCATGGCGAACTCCTTATGGATCAAGCATATTCCagTCCAAGGAGTCGTCGTCCGTCCTCAGCTGTGACATTTCCCCTGATGACCAGTTCATCGTCACTGGCTCGGGAGATAAGAAGGCTACTGTGTATGAAGTCATTTACTAAACCGAATGTGCTCAGATCGTCGTCCGTTGAACTGATTAGATGGAGGAGAAACGGATTCATCATTTCGCCTCGGAGTTTGTAGAGACAAAAGGTGCGACATGGACCTGAATATGAACTCTGCGGGACGGCTGTGCTTTTCTACTCCAGGACGGGATTGGTGGATCTCCAGAACTGaccttgttgtttttttaatgctgtGAGGAAAGCTGGTAGTCTAGCTTGAAAAACGTGGAATTTCTCCAAAGACCTCCTCTTTTCttcttttgtctttctttctttttttaataaaaaaaaatacaagatgAAACCTCTGTAGTGAATATAATAGAAAaagaaatcttatttttttagcCTTCGGAATTTTCATGGACTATTATGGAGCCGTGGTGTATGAATGAATTATGACGAGACCTAAAGGACTGGCCTAAGAACTTCTTCATcgattgtgtttttatttgtttgttttttttttgtaaaagctgACCTGATTATGATTGTATGGATGATGTTAGAAGAAGATGATGGAAAGGACAACAAGGCTCTGGATTTTAGGGTTTCATTGACTTCAGGGAAACGGCTATAAAGACTCTCGGTTAACGTCCTATCACGTGAATACTGTATGTTggagcatgttgaaaattattttgacTTTGGTCGCAAACTTGGTATGTATGAACTGTAAATAAAGCTCTTTAAAAGCCAG
>TCONS_00040504
CGCTCTCTTTTATCTCCCACACTCCCTTCATCTttccccccccccctctctctgaCCCCACCTCCCTTTCGTCATTCCTCCATCGTCCTCTTCCTCTTGCTCCCTCTAGCAACAGCTGCAGGCCCAGCACCTTTCTCAGCATGCTGCCCAGGGGTTACCCATGGCCCCTCACCCCTCCGGCTTGCCTCACCCAGGATTGGCTTTGGGGGGCGGCTCCGGGCTGCTGGCCCTTTCTGGAGCTCTCGGGGCCCAGTTGGCCTCTAAAGACGAGCGAGCCCATTTGGAGGCCGTGGCAGCGGCGGCCGCAGCAGAGCACCACAGAGactGGCCGCGGGGACGTTTACCTGCTCTTCCCATGATCCCCATAGACCGTGAACCTGGACCAAGTTCACTCTCAAACGGAGACAAAGGGAGGTCCTCAGACTACCTCAGCAATGGAAAAAAGAGAAAAGCAGATGAGAAGGAGTTTATGACCGACTATGGCAGCGACGCGGAAAAGAGTGATGACAATTTGGTTGTTGATGAGGACCCTTCTTCGCCAAGAAGCGTGCAGTCGTACTCCTCAAGAGAGAACGGATTAGATAAACTTCCCCCTTCCCGTAAGGAGCCTCTGCCCCAGGCCAGTCCGACCTCGCTGGCTTCCTCCAGCAGTGCTGC
>TCONS_00040505
cctctctctgaCCCCACCTCCCTTTCGTCATTCCTCCATCGTCCTCTTCCTCTTGCTCCCTCTAGCAACAGCTGCAGGCCCAGCACCTTTCTCAGCATGCTGCCCAGGGGTTACCCATGGCCCCTCACCCCTCCGGCTTGCCTCACCCAGGATTGGCTTTGGGGGGCGGCTCCGGGCTGCTGGCCCTTTCTGGAGCTCTCGGGGCCCAGTTGGCCTCTAAAGACGAGCGAGCCCATTTGGAGGCCGTGGCAGCGGCGGCCGCAGCAGAGCACCACAGAGACCGTGAACCTGGACCAAGTTCACTCTCAAACGGAGACAAAGGGAGGTCCTCAGACTACCTCAGCAATGGAAAAAAGAGAAAAGCAGATGAGAAGGAGTTTATGACCGACTATGGCAGCGACGCGGAAAAGAGTGATGACAATTTGGTTGTTGATGAGGACCCTTCTTCGCCAAGAAGCGTGCAGTCGTACTCCTCAAGAGAGAACGGATTAGATAAACTTCCCCCTTCCCGTAAGGAGCCTCTGCCCCAGGCCAGTCCGACCTCGCTGGCTTCCTCCAGCAGTGCTGC

Function

symbol description
tle2a Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE2 (TLE family member 2, transcriptional corepressor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0070491 repressing transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2826 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TLE2 (TLE family member 2, transcriptional corepressor).

Ensembl:

ensembl_id ENSDARG00000042484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040503 False 3739 mRNA 0.52 20 21618121 21667832
TCONS_00040504 False 657 lncRNA 0.58 5 21655429 21658284
TCONS_00040505 True 568 lncRNA 0.58 5 21655473 21658284

Neighbor

gene id symbol gene type direction distance location
XLOC_020410 plpp2b coding upstream 33451 21549419 ~ 21584670 (+)
XLOC_020409 mier2 coding upstream 70264 21516689 ~ 21547857 (+)
XLOC_020408 shdb coding upstream 152313 21398508 ~ 21465808 (+)
XLOC_020407 shc2 coding upstream 266652 21317597 ~ 21351469 (+)
XLOC_020406 odf3l2b coding upstream 306581 21305682 ~ 21311540 (+)
XLOC_020412 NA coding downstream 1333 21669165 ~ 21766839 (+)
XLOC_020413 NA coding downstream 118947 21786779 ~ 21787648 (+)
XLOC_020414 NA coding downstream 121264 21789096 ~ 21797741 (+)
XLOC_020415 NA coding downstream 155127 21822959 ~ 21823227 (+)
XLOC_020416 NA coding downstream 180454 21848286 ~ 21852131 (+)
XLOC_020403 NA non-coding upstream 477002 21134709 ~ 21141119 (+)
XLOC_020402 CU693455.2 non-coding upstream 524156 21093851 ~ 21093965 (+)
XLOC_020399 NA non-coding upstream 1044161 20571834 ~ 20573960 (+)
XLOC_020395 NA non-coding upstream 1184104 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 1285287 20312803 ~ 20332834 (+)

Expression


Co-expression Network