XLOC_020412


Basic Information

Item Value
gene id XLOC_020412
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21669165 ~ 21766839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042138
ATTACCACAAGTTTAATTTGTCAATGTATATATGTCTTACATCACATGGGAAGTGCTACAGGGATATCACAGCGatgctttccaaaaaaaaaaaaaaagttccttggCTTTCAAGAGTCTTTAAAATCCTGACAGTGAACATTGTTCTCAGTATACAAACATAATGCATTATATAAGGGTTGATAGATACAGATATTCAGATAGCATGATGTCAAAGACAGATCGTGCAGCATAGACGGTCTATCTTGAAACAGCCATATTttcagctattaaaaaaaaaaaaaagaacaccgCACTTTCTGCATAATAAACAGACTGATCAAAACACTGTAGTAACACTGCTTACTATTGccataaaaaaaagagaaagaactTGATACAATTCCTTCAGTTAACAAGCAAAAATGGTTCGACTCATCCAaccgtttgttttttttctgagctCTGAGAAATGCTTTATAGAACAAAAGAATAATGAATGAaacaaaactgtaatataaaaagGATCTGTTCCCAGCAGGGTGTTTGGTGCATGTGGTAGATGAATCCTTTTGTGTCTTTCTTTGAACATTCCTGGCCTGGGTGGCAACCACAGCTCTTATTAATGGGATGCATCAGGGCTCGGTGATAGGATCTTTCAGATTGGCAAGCTGTTTCTCTGTCTGACTTGAGAATAGGTGAAATTAGGGGACGGTAAAgtgattaaaaattatatttatattaattacacAATTTCCATATTTCATCATCACATTCAAACTGAGATATCAATATTTTCAGCCCCCAAAGTAAATCGTTTTGTCTTCATGAAGATACTGTTAGATTTTCTTCcatgctttattatttattaacaattatccgtaacatttttttttacaatattaagcatcacatttattcattaattttgatGACACACCATCCACAGTATTTTTAGATTTTGTATTATAGGTCCTGATGAACGGTTTCAACTCACTTTAAAAGAACAGAAGATTTCCCAGTGCAAagctaaaatataattaatgagCATTAAACCACAAACGAGCGCAACATCTGTATGATAATCCGCGGGAATTAAAACGAATAATGATTGTGGTTGTGAATATTTGCCACGTGAATCCTGCATGATTTACCCTGGCTCCTCATTAGACGCTGACTGGTGGAAGAAGGAAATTAAATGCAGGTTGAAGAATTCGACTGGGATTTGCCACATGAATGTCTAATTGGGTTGGATAGGCGAGAAGAGAATTGCTTGTACACCCATATCTTGTTCATCCAGATATCCTCCAAACCGTCTTTTCACACTGGGGGGGAATATGTTGCACTCACTTTAGGCAGGGAGTTTGCGCCTAATGAAATGATTGTCTGGTTTTGGTGTTGCTGTAAGCAGAAGCTCCCCAAGTACCTGCTGTTTGTGGGGCTTCCGCTTTTAGCTTGGAGATTGCTCTGATTTAAACCTCTCCACTCGCTTGCTATACTCGTAATGAAACACTAGCACACTGCACAAAGTATATgctttatccgcttgttaagtcgtggcGTATGAAATACTGTTATTAATTACACTCATTAAAGTGaatattatataaaatcat

Function

GO:

id name namespace
GO:0048865 stem cell fate commitment biological_process
GO:0048866 stem cell fate specification biological_process
GO:0014034 neural crest cell fate commitment biological_process
GO:0014036 neural crest cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042138 True 1595 lncRNA 0.36 2 21669165 21766839

Neighbor

gene id symbol gene type direction distance location
XLOC_020411 tle2a coding upstream 1333 21618121 ~ 21667832 (+)
XLOC_020410 plpp2b coding upstream 84495 21549419 ~ 21584670 (+)
XLOC_020409 mier2 coding upstream 121308 21516689 ~ 21547857 (+)
XLOC_020408 shdb coding upstream 203357 21398508 ~ 21465808 (+)
XLOC_020407 shc2 coding upstream 317696 21317597 ~ 21351469 (+)
XLOC_020413 NA coding downstream 19940 21786779 ~ 21787648 (+)
XLOC_020414 NA coding downstream 22257 21789096 ~ 21797741 (+)
XLOC_020415 NA coding downstream 56120 21822959 ~ 21823227 (+)
XLOC_020416 NA coding downstream 81447 21848286 ~ 21852131 (+)
XLOC_020417 BX649295.2 coding downstream 122983 21889822 ~ 21911948 (+)
XLOC_020403 NA non-coding upstream 528046 21134709 ~ 21141119 (+)
XLOC_020402 CU693455.2 non-coding upstream 575200 21093851 ~ 21093965 (+)
XLOC_020399 NA non-coding upstream 1095205 20571834 ~ 20573960 (+)
XLOC_020395 NA non-coding upstream 1235148 20433570 ~ 20434017 (+)
XLOC_020393 NA non-coding upstream 1336331 20312803 ~ 20332834 (+)
XLOC_020427 NA non-coding downstream 711425 22478264 ~ 22629319 (+)

Expression


Co-expression Network