XLOC_020417 (BX649295.2)


Basic Information

Item Value
gene id XLOC_020417
gene name BX649295.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21889822 ~ 21911948 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040506
TCCGAAAAGAGGAAttggcacttttctttttcaaatataaaatcttttttatatttatCTTCTCTCATTAAATATGACCAATATATGGAAGAAAAAGACCGAAAGAATGGCATGGAAGACAGTTTGTCTCTGTTCAACACAGCCATCCACTCACCATGGTTGGCTGAAATTCCCACCATTCTCTTTTTGAACAAAACAGAAATCCTGGAAGAGAAGATTCGGGTCTCAGATCTGAAAACACTTTCCTGAATTTGAAGGTATGATATATGAtgtaacaaACGCCTTCGAGTTTATCGAAAAGTTATACACACAGAAAGCATTGAGCAGTGACAAATTTCACTCCAGCATTTACTCTCACTACATCTGTGCCACACGCTCTGTAAACCTACAGTTACTCTTGGACAATGTGAAAGACATTATAatcaaaacaaacttaaaacTttacaacctgcag
>TCONS_00041898
taaataattatactttattattgTTTCTGTTGGAGAAATGGAGGATTTCAGCGGTGGGATTATTTGCTCTGAAGATCAGAAAACTGCCACCATCAGAAGTAAAAACATCGACTGCATTCTTAGGGAGGAGGTTGAAAGCTGCTGTCGAGAGGACAAATTACTTTTATTAGGCTCACCAGAAAGTGGAAAGACGAAGTTTATGAAGCAGCTGAGAATCACTAATGGAAATGGATACTCAGAATATGAGAGACGTGGCTTCCCTTATCTGGTGTATTAGAACATCTTCCAGTCTATGAAAGCAATGACAAGCGGCAATATAAGGTTAAAGATTCCTTACTCCAACCCACAGAGCCAGGTGATTGAGAGACCAAAAGTGTTTTTGAAAATATAGAAATAGATCCCAGAGATTAGTGAAGGCTACTTTATAATAACACTCTTGTTTTACTATACATTCATCAAAAAGACGGTGCATGAGATTGACGGAATAA
>TCONS_00041899
TTGTTTTTTGCTTTCACTTAGGCTCACCAGAAAGTGGAAAGACGAAGTTTATGAAGCAGCTGAGAATCACTAATGGAAATGGATACTCAGAATATGAGAGACGTGGCTTCCCTTATCTGGTGTATTAGAACATCTTCCAGTCTATGAAAGCAATGACAAGCGGCAATATAAGGTTAAAGATTCCTTACTCCAACCCACAGAGCCAGAATGGCATGGAAGACAGTTTGTCTCTGTTCAACACAGCCATCCACTCACCATGGTTGGCTGAAATTCCCACCATTCTCTTTTTGAACAAAACAGAAATCCTGGAAGAGAAGATTCGGGTCTCAGATCTGAAAACACTTTCCTGAATTTGAAGGTAGTGTAGTGCACATCTAATACAAGCCAAGAGAAACCTGCTTCTCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116003

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040506 False 454 mRNA 0.36 9 21889822 21911948
TCONS_00041898 False 488 lncRNA 0.38 2 21900318 21901018
TCONS_00041899 True 406 lncRNA 0.41 2 21900680 21903114

Neighbor

gene id symbol gene type direction distance location
XLOC_020416 NA coding upstream 37691 21848286 ~ 21852131 (+)
XLOC_020415 NA coding upstream 66595 21822959 ~ 21823227 (+)
XLOC_020414 NA coding upstream 92081 21789096 ~ 21797741 (+)
XLOC_020413 NA coding upstream 102174 21786779 ~ 21787648 (+)
XLOC_020412 NA coding upstream 122983 21669165 ~ 21766839 (+)
XLOC_020418 gna15.4 coding downstream 38890 21950838 ~ 21957192 (+)
XLOC_020419 si:ch211-207c7.2 coding downstream 53200 21965148 ~ 21968364 (+)
XLOC_020420 gna15.3 coding downstream 60876 21972824 ~ 21984064 (+)
XLOC_020421 gna15.3 coding downstream 92134 22004082 ~ 22014961 (+)
XLOC_020422 gna15.1 coding downstream 109988 22021936 ~ 22036307 (+)
XLOC_020427 NA non-coding downstream 566316 22478264 ~ 22629319 (+)
XLOC_020428 NA non-coding downstream 809274 22721222 ~ 22723937 (+)
XLOC_020429 CABZ01039424.1 non-coding downstream 928610 22840558 ~ 22840675 (+)
XLOC_020430 BX936380.1 non-coding downstream 1043784 22955732 ~ 22955849 (+)
XLOC_020431 BX469928.1 non-coding downstream 1183740 23095688 ~ 23095804 (+)

Expression


Co-expression Network