XLOC_002042


Basic Information

Item Value
gene id XLOC_002042
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18007123 ~ 18071506 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005862
GCAAGCTCATTTCAATCTGCAGTGCAGTAACAGGAAGCACAATATCAGCTGTCTTTAAACTACACCATCTTAATCAAGATTTAAATATGCTTGctgttgcttctttctttcattgtgaATCCGAGCATGCAAAATTATGCCACACAGAAGGAGAACTGTGTTATACAATCCATTTTTAGAGAACAGATCTGTTGGACGAGTTGATTGATTGCAGCACCCTGTGAAAAGTGGATCACATCTCGGTGGTTCAGCACAGATGTGCCTCATCACAAAATGAATTCATATGTTCACGGCTGTGATATAATAAGGGCAGGTGAGGAGACTGTTCTCATGGGCAGACAAACAGATGCGCTGAGAGGCATGTATAACACAGAGAGAGGCTCACAACAAGTTATCCACAGCTCCAGGACAAAAATCATTTTCAACGAGTGGGCACAATCCCTTTAAAATGCCTTTCAACAATGCTTGATAACAGGTCTCATAGCGTGCACAGCTGATCAACCGCAATAGCAGTAGACCCTTGCTTATTTGAGGATTGTGTTTCGAGATGATGAGCCAAACGCAGTCTTTGGGATTGCCTTGGCTGAGACTTGACCTTCCACCATAGGACTGCTGGCAAGCCGAGATGAGTTTTCTTTCCAATCACACAAGCCATTTTCCTTTGAGGAAAAAGACTTTAAAATTTGTACTTCATCCCTTTTATGTGTAAAAGAACTCGGATCTCCTAGCACAGCAACTTTTCATTGGGTAATGTAGGTAAACTGCAATAAAAT
>TCONS_00005700
GGAAGCACAATATCAGCTGTCTTTAAACTACACCATCTTAATCAAGATTTAAATATGCTTGctgttgcttctttctttcattgtgaATCCGAGCATGCAAAATTATGCCACACAGAAGGAGAACTGTGTTATACAATCCATTTTTAGAGAACAGATCTGTTGGACGAGTTGATTGATTGCAGCACCCTGTGAAAAGTGGATCACATCTCGGTGGTTCAGCACAGATGTGCCTCATCACAAAATGAATTCATATGTTCACGGCTGTGATATAATAAGGGCAGGTGAGGAGACTGTTCTCATGGGCAGACAAACAGATGCGCTGAGAGGCATGTATAACACAGAGAGAGGCTCACAACAAGTTATCCACAGCTCCAGGACAAAAATCATTTTCAACGAGTGGGCACAATCCCTTTAAAATGCCTTTCAACAATGCTTGATAACAGGTCTCATAGCGTGCACAGCTGGGCCAGATGGCTGCAGCAGGGAAGTCCAATACTGTGGCTTTTCGATGTCAGGGAGCGGAGAGCTAGCTGAGCTGGAAGTTGGCTTCATAACGGAGTTTCTCTTTGAGGTATGATTCATCACGAAATgagaacaatttgatgaatggcGTGGTATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005862 False 773 lncRNA 0.42 3 18007123 18024486
TCONS_00005700 True 620 lncRNA 0.44 3 18007155 18071506

Neighbor

gene id symbol gene type direction distance location
XLOC_002041 prkab1a coding upstream 60960 17936441 ~ 17946163 (+)
XLOC_002039 phf24 coding upstream 80825 17850934 ~ 17926298 (+)
XLOC_002040 BX927277.1 coding upstream 116920 17890089 ~ 17890203 (+)
XLOC_002038 ccl19b coding upstream 227021 17776981 ~ 17780102 (+)
XLOC_002037 pigo coding upstream 247245 17747880 ~ 17759878 (+)
XLOC_002043 NA coding downstream 169044 18240550 ~ 18282435 (+)
XLOC_002044 CR388008.1 coding downstream 485596 18557102 ~ 18559413 (+)
XLOC_002045 AL928714.1 coding downstream 727421 18798927 ~ 18802435 (+)
XLOC_002046 ppp2r2ab coding downstream 805856 18877362 ~ 18906672 (+)
XLOC_002047 bnip3lb coding downstream 839646 18911152 ~ 18935945 (+)
XLOC_002035 dre-mir-218b non-coding upstream 311783 17695265 ~ 17695340 (+)
XLOC_002032 NA non-coding upstream 419246 17583381 ~ 17587877 (+)
XLOC_002031 NA non-coding upstream 509351 17459657 ~ 17497772 (+)
XLOC_002030 dre-mir-301c non-coding upstream 552551 17454490 ~ 17454572 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 1511783 19583289 ~ 19589733 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 1530828 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 2305582 20377088 ~ 20381313 (+)

Expression


Co-expression Network