XLOC_020420 (gna15.3)


Basic Information

Item Value
gene id XLOC_020420
gene name gna15.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21972824 ~ 21984064 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040509
tttatgttgttgttattttgtacTTGTAGTTTTATACATGTTGGAACAATGGAGTATTACTGCTGCATCTGTTGCGTTTCTAAAGAAGACAGAGAAAAGTCTGCCATAGATAAGGAAATCAACCGCGTACTTGCTGAGCAGGAGAAACAACAACAGGCACAATATAAGCTGCTTTTATTAGgCACGGCAGATAGCGGAAAGTCAACATTTATGAAGCAGCTGAGGCTCATTCATGGAAAAGGATATACAGAAGAGGAGAGGCATTGCTTTGCAAGACTGATTTACCAGAATATCTTTCAAGCTATGCAAGCACTTATACGAGCAATGATCAAGCTAAAGATTCCTTACACCAGTCCACAGAATGAGGTTTGTAGATGTTGGGGGTCAAAAATCTGAGAGAAGGAAGTGGATTCATTGCTTTGAGAATGTGACAGCGATCTTATATGTAGCTTCTCTCAGCGAGTATGATGAAGTGCTGATGGAGGACAGCAGTGAGGTCATTTTCTTCTTCTCTCCTTTTTTCTTTTGTGGCCTAAAAGAAGGCACCTTATGtataaatatcaaatattcccacaatatgaaaaaaaaaaacattattatttactgATTATATTACACTTTTGGAATAATACTAGCTTTTTTAACATATGCATTAATTAGTGGTGGcgtattctgctgtggcgaccccacacaGAAATAAGAGACTAggtcgaaggaaaattaatgaatgtattaattaGTACTACTTACAAATACACATATTTCATAATAAGTGGTCTTAAAACTGCATGTGAAtctaaaaataaagtacaaagtTCTTATTGTATTAATAGTGTATTGCATAACATTTCTGTTGCTACTGAAGTGGGATACGATTAAGGTTCGAGAGAGATTTGTTAATAGTGGGTTTAGGTTTAAGGAATGGGTCACCAGGGTGGTTAAAAGTGCAACTAGATGAAATTACATGcagatacattttaaaatataagcacaatgtaaaacagtgtaaaaaagtatataagtacaatgtaaaaccaTGTAtgtttctaataattcaatggttATTAATTCTGCTGTTGCTAAAAAATACCATGATGTTATATGTTGTATGATGTACCCTCCAACTCTCTTTGCTTCTAGAATCGAATGAGAGAAAGTTTGTCTTTGTTCAACACTATCATCCACAAGCCGTGGTTTGCTAAAACATCAATCATCCTTTTCCTGAATAAAACAGACATCTTAGAAGAGAAAATTCAGTTCTCCGATCTAGTAAACAACTTTCCTGAATTTGAAGGTATAGTTTAGTGCATATTAAAGTGAAAAGGAGCATTTTGTGTGAAATTTTGTTAAGTTTCTCATTCTTCTGTGGTTTTGGCTCCACTTTCAGGCAAACGTCAGAATGTTCATGATGCAATGGTGTTCATCAGAAAGCTCTATGAAGAAAAAACACATTGCCAAGAGACAAATACCTGCAGAAACATTCATTGTCAGTTTATATGCGCCATGGACACCACAAAAACCCGTGAACTCTTTGATTATGTCAAAGATATTGTCCTTACTGAGAGCCTAAAGGAGTACAAAACTTTATAAATCTCGATTCCTGATTATGGGTGGACGCCTTAGAATTGTGCCTTAAAAAGCTTTGCTCTTGTTAGATCTTGGACAATTGTGTACTTGCTGTCTGTGCACAGGCTTTCAAGGGGTCGAGACCACAAGTCGAGACCACAAGGGTGAGTGTTGGGACATGAATGATGGATAAAGTGAGAGCGTGTGACACGTGTGACTAAATCTCACGAAAAAATATGGTCACACTCTTTACAGATTGTTGTGTTAATTAAATTTATACACTAAAATTTAACATTATATAtgagtctcaaaacccttttggatgaggaactactttcttttgccattccttcacatctgcagctgatgtcagaacagccgAAACGGTTGCTCATTCACCAACGGCATTTTAGAGCTGTAAGGtctgaagtgatgacaaaacaggtgagtTTGCTcaaattttaagattataaggctgaacagcatgaaatgccatctgtctacagagatttcccagtatttctctgttgcaatcgggagatcacaataataaacacagaaaatgtccaagcagcacaaacactaacagattactgttgtgtttgtgataaggaaaaatgctaaacacatggggccatttcttctgtttttttttttttactggactAGTGTgtagtaacgaaaacaggagactcattacaAACAGAtagccaaccaaaaagtaactgagggccaacacaaaatacatacattcctaatatgcgagtcccatctcacgctcaatacactacaattatacgGTATAATAAATACAGAactgcaacatacaaaagaaagagattgacttagaaagtgacttaccagttttataatgatttgatcagttgTAGTTCAAAATTACGCTGGGTTTTTCCTCGcctgtaagggcttattatgcggtctctttCACCATtttgtggatagacaacatcaaccttctttggtctgctcaatgaAAGGCTAATGGTTGCTcacgcgctgtctctcagaaattataaatattttaaaataggcactatccttataaataaacggcatagttgcaatctaaaaaaCTACATTCTTGCATAAAAAACGTCAAAAGTACATAATGGTATCCAACAGCCAGTGGTGTAGTCGAGGCCATACGCATGTATACGCAGTATGCCTACTTTTTTCCACAAGCTGTTTGGGTATTATGACTTCCGAGGATCAATAATTGCGTATACCCTCAGCAAAGATGGGGGACTCGAGTCACATGACTTGACTTGAGTCAGACTTAAGTCACAAAATTaaggacttgagacttgcttgacaaatatccaaaaaagacTCGACTTGACTTGATTACAAACAAGACGGCTAATCAAAGTTTATACTATTTAGTCTGACTCAGTGCTTGCCACACATACTATACTTTACTTGAGCGGGCCGtctaagtatatttagtgacacgttttttttaacagttattaTCATTCTTCTACACTGTAGTTGTTCCGCCTACACAGCAAATTcttcagagttaaattctcggtgttgaagcatttcagagtaaagtgttgacgttaaagagttagattttgataaatgaatataataagagttaaaattgattttattcagtgcgaaatcaaggagttatcttttcaacacttggtggtgttatttccaacatccgggaattcatgcagccccagtcactgaagaattttccagacgccattttccatctgaggtttagaacagcaactggtgagtcaaactacctaaatgttggtattttactgactttctttaaggaaatacagttgtaaacatattgttaagttaataactttagaatggagtgacaattttaaacttctgcggttcattcatggtcgtttgtgtatctagcttaactgcattactattgacttcttttcaagaatgtttttatatatgctcacgcatacatagtgcataaaaacatcaaatgtacatgttcaacacatttctgtcacgcttaatgccattttgtgcgttgttacccatctgtaaaataaaatcgacacttctcctttaattcgaagcaaactagcgagggaatccccggagcgcctaacgttagcctactctgccTGGATGCTAatggcaacacaggacggtttccatgagctctggagagtttctaaaacatatctggtgagtaaatgaacatgcttacttgtaaaaggcttcctgactaaaacatatgattgtttgttattcgtgtacgttaatttggttattttaaacacc
>TCONS_00040510
ATGGAGTATTACTGCTGCATCTGTTGCGTTTCTAAAGAAGACAGAGAAAAGTCTGCCATAGATAAGGAAATCAACCGCGTACTTGCTGAGCAGGAGAAACAACAACAGGCACAATATAAGCTGCTTTTATTAGgCACGGCAGATAGCGGAAAGTCAACATTTATGAAGCAGCTGAGGCTCATTCATGGAAAAGGATATACAGAAGAGGAGAGGCATTGCTTTGCAAGACTGATTTACCAGAATATCTTTCAAGCTATGCAAGCACTTATACGAGCAATGATCAAGCTAAAGATTCCTTACACCAGTCCACAGAATGAGATTTATGCTCAAAGAATTCAAAATCAAGACCCAGAAATGGTGAAGAAGTTACAAAGACATTATATAGAAGCTATTTGTCATCTATGGGCAGATGAAGGCTTTCAGACCTGCTACAAAGACGGCGGACAGTTTAAGCTAGACTCCACTAAGTActtCATTGATAACTTAGACCGCATCGCAGCTGATGATTACATCCCTACATGTCAAGATATTCTCCGTGTCCGTGTGTCTACAACTGGCATCCTAGAGTACACTTTTAGTGTCCAGAAGATTATACTCAGGTTTGTAGATGTTGGGGGTCAAAAATCTGAGAGAAGGAAGTGGATTCATTGCTTTGAGAATGTGACAGCGATCTTATATGTAGCTTCTCTCAGCGAGTATGATGAAGTGCTGATGGAGGACAGCAGTGAGAATCGAATGAGAGAAAGTTTGTCTTTGTTCAACACTATCATCCACAAGCCGTGGTTTGCTAAAACATCAATCATCCTTTTCCTGAATAAAACAGACATCTTAGAAGAGAAAATTCAGTTCTCCGATCTAGTAAACAACTTTCCTGAATTTGAAGGCAAACGTCAGAATGTTCATGATGCAATGGTGTTCATCAGAAAGCTCTATGAAGAAAAAACACATTGCCAAGAGACAAATACCTGCAGAAACATTCATTGTCAGTTTATATGCGCCATGGACACCACAAAAACCCGTGAACTCTTTGATTATGTCAAAGATATTGTCCTTACTGAGAGCCTAAAGGAGTACAAAACTTTATAA

Function

symbol description
gna15.3 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in action potential; adenylate cyclase-modulating G protein-coupled receptor signaling pathway; and phospholipase C-activating dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in gill and olfactory epithelium. Orthologous to human GNA15 (G protein subunit alpha 15).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0060158 phospholipase C-activating dopamine receptor signaling pathway biological_process
GO:0001508 action potential biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0031826 type 2A serotonin receptor binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-700 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in action potential; adenylate cyclase-modulating G protein-coupled receptor signaling pathway; and phospholipase C-activating dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in gill and olfactory epithelium. Orthologous to human GNA15 (G protein subunit alpha 15).

Ensembl:

ensembl_id ENSDARG00000092948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040509 False 3867 mRNA 0.36 3 21972824 21984064
TCONS_00040510 True 1086 mRNA 0.40 7 21972872 21981787

Neighbor

gene id symbol gene type direction distance location
XLOC_020419 si:ch211-207c7.2 coding upstream 4460 21965148 ~ 21968364 (+)
XLOC_020418 gna15.4 coding upstream 15632 21950838 ~ 21957192 (+)
XLOC_020417 BX649295.2 coding upstream 60876 21889822 ~ 21911948 (+)
XLOC_020416 NA coding upstream 120693 21848286 ~ 21852131 (+)
XLOC_020415 NA coding upstream 149597 21822959 ~ 21823227 (+)
XLOC_020421 gna15.3 coding downstream 20018 22004082 ~ 22014961 (+)
XLOC_020422 gna15.1 coding downstream 37872 22021936 ~ 22036307 (+)
XLOC_020423 ubxn6 coding downstream 276146 22260210 ~ 22274393 (+)
XLOC_020424 scamp4 coding downstream 318550 22302614 ~ 22315323 (+)
XLOC_020425 ddx59 coding downstream 433687 22417751 ~ 22430191 (+)
XLOC_020414 NA non-coding upstream 175083 21789096 ~ 21797741 (+)
XLOC_020413 NA non-coding upstream 185176 21786779 ~ 21787648 (+)
XLOC_020412 NA non-coding upstream 205985 21669165 ~ 21766839 (+)
XLOC_020427 NA non-coding downstream 494200 22478264 ~ 22629319 (+)
XLOC_020428 NA non-coding downstream 737158 22721222 ~ 22723937 (+)
XLOC_020429 CABZ01039424.1 non-coding downstream 856494 22840558 ~ 22840675 (+)
XLOC_020430 BX936380.1 non-coding downstream 971668 22955732 ~ 22955849 (+)
XLOC_020431 BX469928.1 non-coding downstream 1111624 23095688 ~ 23095804 (+)

Expression


Co-expression Network