XLOC_002043


Basic Information

Item Value
gene id XLOC_002043
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18240550 ~ 18282435 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005863
atttagttatttggaGATTAAATTAAAGTGCACCATAATCAAAGAAAATcaggttttctaaaaaaaaaagtcaaatgaaaagagcatgttcaacataaaacaaatatgtgAACACTTCAACACGTGGATGCATACATTTTGCAAACTCCAAGTTGAACCTGCTGCAGTTTCCCTCCCCCACCCCTCTgttcatgtgtatgtgtgtgtgtgtgttaagcacaCATCCCTCACAGCGCCTCATTCAACTCATGAACGCGCGGCATTTGCAAACACGTGCTAATGACGCAATCAATTGGAGACGCCTTTTCCCGCGAACTCATCTCTCCTGGGAGAGCAGTCTTTATAGGAAACAtgccctttgtcttcatgctgggAGTAAGAAAAAACAGAAAGCGTAAAATACCTCAAGAGGATGCAGAACATTACATTTGTTGTAAAAGTGACAAACCTGCAAGTGCAATTCATCAACAATTACAAAGCATGGATGCATCGAAAGAAGATGGGTCTTTTGGGAGACTTGTAAATGATGACCACAAAGCTCCTAACTGCAAAATGAAAATCATATCTTTGCTGTGTGCAACATACTTCCAGGAGAAGATATAACCTACAATTATGGAGATTCTGGTTATGTCCCATAATGCTTCTGTCTCCTCACCTGCTTTGGACAACGTGAAGATGAGTGATCCTCACAAACAAACTGAGCCACAACAGTCAGACAAAGCAAGAAGATCAGGGAATAAGACGGCCTCTTCCAGTCCTTCTGGATATTTGCATTAGACACTCATTTGAGAGTCGGCGCAGAAGTATAAAAGTCTTCTGTTCCTTTAAATCCTACCCTTGAGGAAAAATGTGTTCCCAGAAGACACCAGGACCCAAAACACAAGGgggaaaaaagacaaacaagCAGGAGGGGGAAACTCTGTGAAGCTCTGAATATTTTCTCCTGTAATTTTGCTTTCATGTGAATGAACCGCACTGGTCTATTGTTTGCCTGCAAAGTGCTCTCTTAATATTAGCGAATTACACTAGCTTCGTCTGTTTTCAGAGAACATCTTTTGCAGACTGAGATGGAGAATTTGCatttaccttatttatttatttttcatttaatttctccGCAGCTTAACAGCACCTGCTTGGATATTTTCTAGTAAAAGCCTCTGCAAATATTTTGCTTTGTAAACATCACGGAACACAGTTTTTGATTTAACCCTACTTTCATCGAAAGACACTGTGCCCAACTATGATCCTTGTGGCAAATTGAAATGTGATGGCATTGAAATCTATTATTAATTCATGAATCCCTGATTAGGGATTACTCTATTAAGCAAAACTGATTTCCCCTCATACTAAAGTGTGTTAAAACacacaaatatgaataaaactgttttttttttttttttagatttcatttcaacaaattaaaaacaactaGGCTAAATACTCAAACAACAAGCAAAGAGAATTTGCATGGGCGTCCTCAGCCTTACGTAAATGACCGTAAAGCAGCAAATTGTCAGAATAATAGGAAGAGACTGTTACATAAGGCTTCATGATTTGGCGACTTTGTGGAGGAGGAGAATTGTTGCTTTGAATGATGGTTTAAGAGCTTAGATTATCTAGTCAAGGTAACTCATCCAAATAGCTGATAGGATCAGATGGTTCCTACGCATTTCTAGATTATTTTAAGGCAGAAAAATTATATGCAGTTCTGATACGCTCTCAGCTTTCGTCTTCCCATTCATCTGAATACCAGTTTCTCCACTGGAGTATCAGATCTATCTAATACTCTAATATAGACCACTGTTGGACTGAAATATTGCTGCAGAAAAAAATAactttgtgaaataaataatttcagaAATGTTTATCTTTACCATTCATTCAGGATTGATTATTTTAGATTGCACAGTACCAGTtcccactattaactactggATTTTAATCAGCTTAACATTAATATAGTGTTTGTTTATTAGTTCTTATATGTACaacatgatcttattctacatcttaatgttttgttaatatcaagaattgaagagtttagatgcaaaaacctttacatgccatctgaaattgttctctaaaatgagcatttttatcaggttGCTGTGTGCATGTTctttaatatcacttttatggcaaaaaaaaaagtccttttccgatggaaatttcagacggcacttaaagtgttttgcatctaaactcttcaattttaccttaaaataaagtttgacctATTGTTTTATTACAgaagtaatgaacatttatgatttttcatccattcatttctaTGGTCTCTGCACAAATCTGACAAAGTCAATGGATGTCGGAGATGTAATGAGGCATATATGATCCAAGTCGGCTCCTCTAATCTTCCCAATTTACagcatttctgtttttaatttagCTGTCGTTTCATGCTGTTGTATTAATAAACAGACATAATATCAAGGATTTGTAATCAGGCTCTATTTTTTACTTGCCATGCATGCATTATGGAGCATAACAGAAATGAGCACAATAATAAGCAATTAAAACTAATaaactaaaaaactaataaaaaatgatgtttatgattttttgacacacaatgtttaaaatatatctaTCAAAATAGTTATTCTAGGCATAAAGATGCAGGTTTTTCTATCGCATTaaaaaaaccttttt
>TCONS_00003957
ATGAACGCGCGGCATTTGCAAACACGTGCTAATGACGCAATCAATTGGAGACGCCTTTTCCCGCGAACTCATCTCTCCTGGGAGAGCAGTCTTTATAGGAAACAtgccctttgtcttcatgctgggAGTAAGAAAAAACAGAAAGCGTAAAATACCTCAAGAGGATGCAGAACATTACATTTGTTGTAAAAGTGACAAACCTGCAAGTGCAATTCATCAACAATTACAAAGGAGGATGAGTTTTCACCACTGAAGCTTTATTCAGAGGGGATTTTGTTCTTGAGTACAAGTTTGGGTTCATGGATGCATCGAAAGAAGATGGGTCTTTTGGGAGACTTGTAAATGATGACCACAAAGCTCCTAACTGCAAAATGAAAATCATATCTTTGCTGTGTGCAACATACTTCCAGGAGAAGATATAACCTACAATTATGGAGATTCTGGTTATGTCCCATAATGCTTCTGTCTCCTCACCTGCTTTGGACAACGTGAAGATGAGTGATCCTCACAAACAAACTGAGCCACAACAGTCAGACAAAGCAAGAAGATCAGGGAATAAGACGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095686

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005863 False 2676 lncRNA 0.35 5 18240550 18282435
TCONS_00003957 True 565 processed_transcript 0.42 5 18240798 18251068

Neighbor

gene id symbol gene type direction distance location
XLOC_002042 NA coding upstream 169044 18007123 ~ 18071506 (+)
XLOC_002041 prkab1a coding upstream 294387 17936441 ~ 17946163 (+)
XLOC_002039 phf24 coding upstream 314252 17850934 ~ 17926298 (+)
XLOC_002040 BX927277.1 coding upstream 350347 17890089 ~ 17890203 (+)
XLOC_002038 ccl19b coding upstream 460448 17776981 ~ 17780102 (+)
XLOC_002044 CR388008.1 coding downstream 274667 18557102 ~ 18559413 (+)
XLOC_002045 AL928714.1 coding downstream 516492 18798927 ~ 18802435 (+)
XLOC_002046 ppp2r2ab coding downstream 594927 18877362 ~ 18906672 (+)
XLOC_002047 bnip3lb coding downstream 628717 18911152 ~ 18935945 (+)
XLOC_002048 dpysl2b coding downstream 669836 18952271 ~ 18992471 (+)
XLOC_002035 dre-mir-218b non-coding upstream 545210 17695265 ~ 17695340 (+)
XLOC_002032 NA non-coding upstream 652673 17583381 ~ 17587877 (+)
XLOC_002031 NA non-coding upstream 742778 17459657 ~ 17497772 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 1300854 19583289 ~ 19589733 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 1319899 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 2094653 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 2166032 20448467 ~ 20452630 (+)

Expression


Co-expression Network