XLOC_020439


Basic Information

Item Value
gene id XLOC_020439
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 24195021 ~ 24197050 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042146
ACGAGCTCCAACAATGCATTATACTGTGGTAGTTTAGCAGCGagctacagtacatttctgtttgGGAAACACATCCCTGAGTGAAAGTGTGCCTGAGTGATTGGCAAGAAGAGCATGGAGCGCGGCAGGAATCGGTGTGTAACGATTCTGCGGGAAAGGCATATTGCATCATTTGATATGTTTCAGTGTTGTTGCGCATGGAAAtatcaatacttttgacaacagcAGACAGTAGTATGAAGCTCTATTCTTGGCTGTTTTATCTCATGAGCGATGTTCAAGGGTGGGTGACGGCTTTAAATCTCTGAGCCTAAGGGGAGACGCTTTGGGTTTAGGTAGAATCTGGTGTTCAGATTCAGAGTAACCGGTCTGTTGCAGTGCTATGGAAACCACGCATTGATCTGCCGAGCTGTGCTGGAGAGGAGTggcagagacagagagaaagtgACAGACACATCACAGCGCACCAGAGGGGACGAAGAGTGCAGGAGAGACGCGGCTGGAGACAATGATATATGAAATGGAGAAAGACACCTGTGCTGGAGCAAGTAGAAAGAAATGAAGAATGAATGTGATTCATGCACATGCTGACTTTGCAGGAAGTGTGTAATTGCTGCTCCTCTAGTGGCATCAAGcggaacagcaaaaaaaaaataaatggcacATTTGTAATTTTCGCTGTTTCTTTATGGTGCAAGAATGTAGAATTAATTGTTTTCTCAAAGGTTTATCTGGCCTACCATTGGTCGAAGAAATGCTAGAAATAATTATGCCATTGGACTTTGGGTGGAAACTGGGTGGCTTTCAAAAATGCATTTTCTAAACGTTAGTAAATATTTTAGCAactatgtaatttttttaacccATTATTGATACGtatccctgtatacatttctggagagcgcgaaatatgtcccaggaggtaagttttttgctgttttcttttcgaaaatccaccagaggccgctgtgtaagctttttcagatctcaaatttcgaGCGCCATTCACGCCTGCCCTTCTCAAGTACCCCACTTTAGGTCGCTTtcgattgactgactgatctACTGATACCCCGTCCACCCCTTTCCGAAATCTACCTGTTGTGCTCGCAAGTCTGTCACTGCTTCCATAatttgcatacttccatactatatagtacactaaaatcagtatgcgagccgagtagtatgtccaaattcatagaattcaaaaatcagtaagcgagaagtacccgggatgacttactacttccggcgagattctggactGCGCATTCCATgcatgctgcactatcccatgacaccccgtgagagaattcatgaataggaaGCAACGCAACTggcgcagGTCCTGCCGTATTTACGTCGATGACATCACCGGGGGTTGGCTGGAGTAATGTAGGACCTCTTTTAAGAAGTGGAACAGTTGTGGAGACGGAGTTGAATGGCGTGTTGTTTGGAGGTGTTGTTGAAAACTATGATTACTAGCGATACTTATTGTGCATTGTGTATTTctgtgttgtgtgtgaaaatttGGTTTTCTTGTTGTTATCCCTCCAGTGTCCACCCACTGCAGATTTTGTTTTGGCTTTGTTTGTtgtcactgtaaaaatattgtatatacaCAGTTTAAAGCAGTAGGGGTTGGATGCTAAACTATTCATGATTGTAaatattttctcttgtttttatATATAGGTAGGACGTTAGGTGtagtattgtatttttatttctgttattttctttgtAAGTTGTAGGTAGTTTTAATGTGGGTGTTCAGGTAGAGtgtactttttgtttattatttttgtggc

Function

GO:

id name namespace
GO:0000038 very long-chain fatty acid metabolic process biological_process
GO:0006629 lipid metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:1901617 organic hydroxy compound biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042146 True 1814 lncRNA 0.42 2 24195021 24197050

Neighbor

gene id symbol gene type direction distance location
XLOC_020438 b3galt2 coding upstream 25932 24157807 ~ 24169089 (+)
XLOC_020437 aspm coding upstream 612416 23546926 ~ 23582605 (+)
XLOC_020436 CR388178.2 coding upstream 701689 23492326 ~ 23493332 (+)
XLOC_020435 NA coding upstream 705142 23484437 ~ 23489879 (+)
XLOC_020433 dennd1b coding upstream 715032 23359369 ~ 23479989 (+)
XLOC_020440 glrx2 coding downstream 17615 24214665 ~ 24219083 (+)
XLOC_020441 uchl5 coding downstream 23887 24220937 ~ 24233856 (+)
XLOC_020442 ccdc50 coding downstream 121081 24318131 ~ 24362712 (+)
XLOC_020443 BX649608.2 coding downstream 181014 24378064 ~ 24381314 (+)
XLOC_020444 p3h2 coding downstream 192085 24389135 ~ 24482035 (+)
XLOC_020434 NA non-coding upstream 810565 23384198 ~ 23384456 (+)
XLOC_020432 NA non-coding upstream 931976 23228710 ~ 23263045 (+)
XLOC_020431 BX469928.1 non-coding upstream 1099217 23095688 ~ 23095804 (+)
XLOC_020445 BX784032.1 non-coding downstream 294577 24491627 ~ 24500269 (+)
XLOC_020451 NA non-coding downstream 517203 24714253 ~ 24851829 (+)
XLOC_020456 NA non-coding downstream 930192 25127242 ~ 25128870 (+)
XLOC_020457 NA non-coding downstream 943848 25140898 ~ 25141630 (+)
XLOC_020469 NA non-coding downstream 1189273 25386323 ~ 25386800 (+)

Expression


Co-expression Network