G100227 (LOC106595688)


Basic Information

Item Value
gene id G100227
gene name LOC106595688
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90672265 ~ 90768876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU111403
TCAAATCAGGCTTACCTCCTTAGTGCCGTCCGGATGCGCGACTGTCACAGTACACTTTCCTTCAGTCCTGGCAGTGACCAAACCCTTAAGGTACAGCTCCTTGGTGTCTGCGACATAGCATGCGTTCTTTGAATCAAAGGGGTGCCGTTTGtgcctccatcctctccttctcaGGCTTACGGAGGTATATGGCAGCCTTGCCGTAGATTTGCATCTCCGCGTCCGTACTCATGGTGACGGATCACTAGGAAAGAGGCGAAACAAGAAACATGATTGACTCTGTGGTGCTTCCTCCACAGTCAACAGAGTTGTGAG
>TU111402
ATAGATCATCCATGCTGCATAACGCTCTTTGAGGTTATACAACACAGAGGCTTCATTCAGGTAGGTCATCATGGCCATGTCCTCAATCTTGTCGTACTTAGGGGGGTTCATCTGGTAGACGTCTGCTTCCTTGAACTCTTTTCCTCCTCCTTAGTGCCGTCCGGATGCGCGACTGTCACAGTACACTTTCCTTCAGTCCTGGCAGTGACCAAACCCTTAAGGTACAGCTCCTTGGTGTCTGCGACATAGCATGCGTTCTTTGAATCAAAGGGTGCGGTTTGtCCTCCTTAGTGCCGTCCGGATGCGCGACTGTCACAGTACACTTTCCTTCAGTCCTGGCAGTGACCAAACCCTTAAGGTAAAGCTCCTTGGTGTCTGCGACATAGCATGCGTTCTTTGAATCAAAGGGTGCCGTTTGtgcctccatcctctccttctcaGGCTTACGGAGGTATATGGCAGCCTTGCCGTAGATTTGCATCTCCGCGTCCGTACTCATGGTGACGGATCACT
>TU111400
ATAGATCATCCATGCTGCATAACGCTCTTTGAGGTTATACAACACAGAGGCTTCATTCAGGTAGGTCATCATGGCCATGTCCTCAATCTTGTCGTACTTAGGGGGGTTCATCTGGTAGACGTCTGCTTCCTTGAACTCTTTTCCTCCTCCTTAGTGCCGTCCGGATGCGCGACTGTCACAGTACACTTTCCTTCAGTCCTGGCAGTGACCAAACCCTTAAGGTACAGCTCCTTGGTGTCTGCGACATAGCATGCGTTCTTTGAATCAAAGGGTGCGGTTTGtgcctccatcctctccttctcaGGCTTACGGAGGTATATGGCAGCCTTGCCGTAGATTTGCATCTCCGCGTCCGTACTCATGGTGACGGATCA

Function

NR:

description
myosin heavy chain, fast skeletal muscle-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111403 False 315 lncRNA 0.37 3 90672265 90768398
TU111402 False 513 lncRNA 0.51 3 90723552 90768876
TU111400 True 374 lncRNA 0.37 2 90768156 90768876

Neighbor

gene id symbol gene type direction distance location
LOC118966735 LOC106564289 coding downstream 15246 90645978 ~ 90657019 (-)
LOC110531748 polr3a coding downstream 69491 90548240 ~ 90602774 (-)
LOC110532927 LOC106577426 coding downstream 174117 90482721 ~ 90498148 (-)
LOC110515024 LOC106613759 coding downstream 515947 90151430 ~ 90156318 (-)
LOC110515023 LOC106594692 coding downstream 521566 90142444 ~ 90150699 (-)
LOC110513773 LOC107083051 coding upstream 34448 90803324 ~ 90813931 (-)
LOC118936689 dpysl4 coding upstream 151119 90919995 ~ 90970591 (-)
LOC110516041 jakmip3 coding upstream 214391 90982735 ~ 91072716 (-)
LOC110531579 LOC106577354 coding upstream 321535 91090411 ~ 91119379 (-)
LOC118966091 tcerg1l coding upstream 548292 91317168 ~ 91530447 (-)
G100216 NA non-coding downstream 90041 90581994 ~ 90582224 (-)
G100215 NA non-coding downstream 90879 90581164 ~ 90581386 (-)
G100207 NA non-coding downstream 96013 90575532 ~ 90576252 (-)
G100192 NA non-coding downstream 106321 90564801 ~ 90565944 (-)
G100172 NA non-coding downstream 146633 90525344 ~ 90525632 (-)
G100271 NA non-coding upstream 98614 90867490 ~ 90867760 (-)
G100278 LOC106592262 non-coding upstream 115940 90884816 ~ 90890245 (-)
G100282 NA non-coding upstream 126811 90895687 ~ 90898053 (-)
G100288 NA non-coding upstream 139613 90908489 ~ 90909346 (-)
G100291 LOC106577418 non-coding upstream 142075 90910951 ~ 90911887 (-)
G99602 NA other downstream 708060 89963873 ~ 89964205 (-)
G99595 NA other downstream 714349 89957392 ~ 89957916 (-)
G99035 NA other downstream 1382209 89287214 ~ 89290056 (-)
ghitm LOC100136239 other downstream 1420177 89223150 ~ 89270371 (-)
G98878 NA other downstream 1596027 89075847 ~ 89076238 (-)
G100582 NA other upstream 463864 91232740 ~ 91233788 (-)
LOC110531398 glrx3 other upstream 1023703 91791792 ~ 91832379 (-)
G102060 NA other upstream 1822705 92591581 ~ 92595514 (-)
G102083 NA other upstream 1868422 92637298 ~ 92638881 (-)

Expression


Co-expression Network