G100278 (LOC106592262)


Basic Information

Item Value
gene id G100278
gene name LOC106592262
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90884816 ~ 90890245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU111464
ccctcaccctgtggtatgacccgtccccctcaccctgtggtatgacccATCCCCctgacagaaacaaagacagacaggcaagcagacagacagactgacggacggacagacagacaggtgctgACCAGTCTAAGTCCTCTGTCTTTCGGTCTTGTAGCAGGTCGTTGACCTCGGCTCTACAGCGGTCCTGGTAGTCCTGATGCTGAGACAGGTTATACAGAACCCAGCTGATCCCGCTGGCCGTGGTGTCATGACCTCCAAACATGAAAGTGTCTGCCTCTGCTTTTATCTCCTCATCTGTGAGACCATGACCATCCTCATCCTTTGACAGCAGTAACAAATCAATGAAGTCTGCTactcttttcttcttcttctcctcccctcctgtgGTGTCAGTGTGGCTCTCTGGCTCCCCCCGGTGGAGAAGCTGTGCTCTGCGCTCCTGGACAACAGTCCTGGTGAACCCGTGTACTACACTACAGGCCTGTTTGAAGCGCTGTCCCTCTGGGGACCTCCAGTACAGATAGTCCCAGTGGTGCAGGATACGTCCTCTCCGCTCGATCACCAGGGTACTCAGCTCAAATATGGCTGCTATGTACTCACTGGAACTCTCCTGGCAGTTGCTGTTGTAGCTGAAGGTACATCTGAGCAGACTGTCCAGAGTCATCAGGCTGATGTGATTGAACATGTCCTGGCGGCTCTCTCCCTCGGCCACCAGGCGGCGCCACTTAGACTGACGCCAACCAACAGGGGAGAGACCATAGAGTTAATTAGAGGAgtcatctttgtatctgtcctATTAAGGTGTCTGTGACAGCCTCAGTAACACTGCCCGTtctatctccattttgaagtagtccattttcttATTTCTTAGTGTTTTTAAAAAGCCTAAAGCTAATATTGGTGATTTACAGCCACCTGCAGTGCTGGAGTCCTGAATCATATCTTGTGTCATGTATTTattgtggccactagatggcagtgatATAGCTTAAAGCCATTTACAAACACTGCAGCCAGGCGACAATGCTCTGATATTTGGCTGATCACTTAaaacccataggaatccccaccaaGTTGActtctttaaaatggtggaatcACTCAAAGGCAATGTACATGCTAAAGTGGGTTATGTCCATAACAAGTCCTCCAACTAACTCTATGGGAGACATTTGTGTTGCCTACCTCACCACATCGCCACACCAggtgaggc
>TU111465
ccctcaccctgtggtatgacccgtccccctcaccctgtggtatgacccATCCCCctgacagaaacaaagacagacaggcaagcagacagacagactgacggacggacagacagacaggtgctgACCAGTCTAAGTCCTCTGTCTTTCGGTCTTGTAGCAGGTCGTTGACCTCGGCTCTACAGCGGTCCTGGTAGTCCTGATGCTGAGACAGGTTATACAGAACCCAGCTGATCCCGCTGGCCGTGGTGTCATGACCTCCAAACATGAAAGTGTCTGCCTCTGCTTTTATCTCCTCATCTGTGAGACCATGACCATCCTCATCCTTTGACAGCAGTAACAAATCAATGAAGTCTGCTactcttttcttcttcttctcctcccctcctgtgGTGTCAGTGTGGCTCTCTGGCTCCCCCCGGTGGAGAAGCTGTGCTCTGCGCTCCTGGACAACAGTCCTGGTGAACCCGTGTACTACACTACAGGCCTGTTTGAAGCGCTGTCCCTCTGGGGACCTCCAGTACAGATAGTCCCAGTGGTGCAGGATACGTCCTCTCCGCTCGATCACCAGGGTACTCAGCTCAAATATGGCTGCTATGTACTCACTGGAACTCCTGGACGAAAGGAAAGGAGCCATCAGACAGagttagatagaggagggaggatggagacagggttagatagaggagggaggatggagacagggttagatagaggagggaggatggagacagggttagatagaggaggagggtggagacagggttagatagaggagggaggat

Function

NR:

description
docosahexaenoic acid omega-hydroxylase CYP4F3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111464 False 1219 lncRNA 0.50 5 90884816 90890245
TU111465 True 782 lncRNA 0.54 4 90886705 90890245

Neighbor

gene id symbol gene type direction distance location
LOC110513773 LOC107083051 coding downstream 70885 90803324 ~ 90813931 (-)
LOC118966739 LOC106577420 coding downstream 136425 90746652 ~ 90748391 (-)
LOC118966738 LOC106594844 coding downstream 138210 90745393 ~ 90746606 (-)
LOC118966737 LOC106577420 coding downstream 187881 90695281 ~ 90696935 (-)
LOC118966736 LOC106585883 coding downstream 189583 90693579 ~ 90695233 (-)
LOC118936689 dpysl4 coding upstream 29750 90919995 ~ 90970591 (-)
LOC110516041 jakmip3 coding upstream 93022 90982735 ~ 91072716 (-)
LOC110531579 LOC106577354 coding upstream 200166 91090411 ~ 91119379 (-)
LOC118966091 tcerg1l coding upstream 426923 91317168 ~ 91530447 (-)
LOC110531398 glrx3 coding upstream 903373 91791792 ~ 91832379 (-)
G100271 NA non-coding downstream 17056 90867490 ~ 90867760 (-)
G100201 NA non-coding downstream 86605 90741415 ~ 90798211 (-)
G100202 NA non-coding downstream 104107 90736226 ~ 90780709 (-)
G100204 NA non-coding downstream 112626 90751146 ~ 90772190 (-)
G100227 LOC106595688 non-coding downstream 115940 90672265 ~ 90768876 (-)
G100282 NA non-coding upstream 5442 90895687 ~ 90898053 (-)
G100288 NA non-coding upstream 18244 90908489 ~ 90909346 (-)
G100291 LOC106577418 non-coding upstream 20706 90910951 ~ 90911887 (-)
G100296 NA non-coding upstream 28170 90918415 ~ 90918691 (-)
G100384 NA non-coding upstream 29319 90919564 ~ 90919854 (-)
G100197 NA other downstream 25844 90625080 ~ 90858972 (-)
G99602 NA other downstream 920611 89963873 ~ 89964205 (-)
G99595 NA other downstream 926900 89957392 ~ 89957916 (-)
G99035 NA other downstream 1594760 89287214 ~ 89290056 (-)
ghitm LOC100136239 other downstream 1632728 89223150 ~ 89270371 (-)
G100582 NA other upstream 342495 91232740 ~ 91233788 (-)
G102060 NA other upstream 1701336 92591581 ~ 92595514 (-)
G102083 NA other upstream 1747053 92637298 ~ 92638881 (-)

Expression


Co-expression Network