XLOC_002046 (ppp2r2ab)


Basic Information

Item Value
gene id XLOC_002046
gene name ppp2r2ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18877362 ~ 18906672 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003961
GAGGAGAAAGCTGAGGAGGAAAGACAGAACATTTCAACATTTAATAGCGAACTGAAGGGCTACCGACAAAAAATAGCGTCTTTCCGACATTCCTCTTCATGCAATTGCAGAGGAGCTGCttgcaataaaataaaccctGCAAAGTTCTCTGGACAGTTCTGATAGCAAAAACTAGCAGCAGCAGTAAGCCAAGGTAAGAGCCGGAAGTGACGCAACAGCGGACCCGAAAGCGTGATTCCCATTCAAAATACAAGTACAAGAAAAGGATTTTAAAAAGTATCAGAagcacttttattttgaaaaacagcaTTTCCGGCGACTCTCTTGGAAATTTTGCTCTGGTCGCCTTCACACTGCTTATCAAGACTAGGGTCCGACATCGCCACTCTCGCCATGGCAGGAGCCGGAGGCGGGGGAAACGATGTGCAATGGTGCTTTTCACAAGTGAAAGGGGCGATTGATGATGACGTAGCCGAAGCCGACATCATCTCTACTGTGGAGTTCAACCACTCAGGGGAGCTGCTAGCCACAGGAGATAAAGGCGGACGAGTAGTCATCTTCCAACAAGAGACCGAGAACAAGAGTCAGCCACAGTGCCGTAGTGAatacaatgtttacagcacattTCAGAGCCACGAGCCTGAGTTTGACTACCTGAAGAGCTTGGAAATCGAGGAGAAGATTAACAAGATTCGCTGGCTACCACAGAAGAACGCTGCACAGTTTTTGTTGTCCACTAATGATAAAACTATAAAGTTGTGGAAGATCAGCGAGCGGGACAAGAGACCAGAGGGATACAATCTGAAAGAAGAGGATGGACGCTATAGAGATGCTTCTACCATCACAACTCTACGGGTGCCAGTATTTAGGCCTATGGATCTCATGGTGGAGGCCAGTCCGCGAAGGGTCTTTGCCAACGCTCACACCTACCACATCAACTCCATCTCGGTCAACAGCGACAATGAGACCTATCTGTCTGCAGACGACCTGCGCATTAACTTGTGGCACTTGGAGATCACAGACCGCAGCTTCAACATTGTGGACATTAAACCAGCCAACATGGAGGACCTAACGGAGGTTATCACAGCCGCAGAGTTTCACCCTCACCAATGTAACACGTTTGTCTACAGCAGCAGCAAAGGCACCATCCGCCTGTGTGACATGCGTGCATCAGCACTTTGTGACAAGCACTCTAAATtGTTTGAGGAGCCTGAAGACCCCAGCAACCGCTCTTTCTTTTCTGAAATCATCTCCTCTATCTCAGACGTCAAGTTCAGTCACAATGGCCGCTACATGATGACCCGAGACTACCTGTCAGTCAAAATCTGGGACCTCAATATGGAAAATCGACCCGTTGAGACATACCAGGTTCATGAGTACCTCAGGAGTAAGTTGTGCTCTCTTTATGAGAACGACTGCATCTTTGACAAATTCGAGTGCTGCTGGAACGGAAACGACAGCGTGGTGATGACTGGATCATACAACAACTTCTTCCGAATGTTGGACCGCACCCAGCGGCGAGATGTCACCCTGGAGGCTTCGCGCGAGAGCTGCAAGCCCCGGCAGGTCCTCAAGCCGCGCAGGGTTTGCGCAGGAGGCAAGCGGAAGAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTACACACCGCCTGGCACCCGCAGGAAAACATCATCGCAGTGGCAACCACCAACAACCTCTACATCTTCCAGGAAAAAGTGAACTAATACTGTCATCACGGGGAAAGAAAACCTCCGAACCTCTCTCGCTCTATGTGaaaccaacaaaaaaaagttgaactagcAAGAATCATTTCTGTGACAACCACCGTCATCACATAAACCAACCTTGGCCTACTCCAGGACAGGATGAACTAGTTGAGCCAACTAGCGGCTGCCAATACTGAGATAACTGGTTCAAGCTGGTCTGGAGAAGAAGCGCAACCTGGCTTTGGCCTCTGTGGCACCATGACATGCGCCTTGCACTGGTGATGTTGTGCCAACCTGTGTCTGTACCCTCCATCCCTTTTCCCCTTTACCCACAAGTCAGTCCGAGCCCAGGGATGAAATGGGCAGCAAAGCTCTGACAGATttcaaccagtttttttttttctttagtttttttttctttcatttttttggcTTCGGTTTCTTCAAGGTGTCTGTATAAAAACTAATTTGAACTCA
>TCONS_00003962
aTTTCCGGCGACTCTCTTGGAAATTTTGCTCTGGTCGCCTTCACACTGCTTATCAAGACTAGGGTCCGACATCGCCACTCTCGCCATGGCAGGAGCCGGAGGCGGGGGAAACGATGTGCAATGGTGCTTTTCACAAGTGAAAGGGGCGATTGATGATGACGTAGCCGAAGCCGACATCATCTCTACTGTGGAGTTCAACCACTCAGGGGAGCTGCTAGCCACAGGAGATAAAGGCGGACGAGTAGTCATCTTCCAACAAGAGACCGAGAACAAGAGTCAGCCACAGTGCCGTAGTGAatacaatgtttacagcacattTCAGAGCCACGAGCCTGAGTTTGACTACCTGAAGAGCTTGGAAATCGAGGAGAAGATTAACAAGATTCGCTGGCTACCACAGAAGAACGCTGCACAGTTTTTGTTGTCCACTAATGATAAAACTATAAAGTTGTGGAAGATCAGCGAGCGGGACAAGAGACCAGAGGGATACAATCTGAAAGAAGAGGATGGACGCTATAGAGATGCTTCTACCATCACAACTCTACGGGTGCCAGTATTTAGGCCTATGGATCTCATGGTGGAGGCCAGTCCGCGAAGGGTCTTTGCCAACGCTCACACCTACCACATCAACTCCATCTCGGTCAACAGCGACAATGAGACCTATCTGTCTGCAGACGACCTGCGCATTAACTTGTGGCACTTGGAGATCACAGACCGCAGCTTCAACATTGTGGACATTAAACCAGCCAACATGGAGGACCTAACGGAGGTTATCACAGCCGCAGAGTTTCACCCTCACCAATGTAACACGTTTGTCTACAGCAGCAGCAAAGGCACCATCCGCCTGTGTGACATGCGTGCATCAGCACTTTGTGACAAGCACTCTAAATtGTTTGAGGAGCCTGAAGACCCCAGCAACCGCTCTTTCTTTTCTGAAATCATCTCCTCTATCTCAGACGTCAAGTTCAGTCACAATGGCCGCTACATGATGACCCGAGACTACCTGTCAGTCAAAATCTGGGACCTCAATATGGAAAATCGACCCGTTGAGACATACCAGGTTCATGAGTACCTCAGGAGTAAGTTGTGCTCTCTTTATGAGAACGACTGCATCTTTGACAAATTCGAGTGCTGCTGGAACGGAAACGACAGCGTGGTGATGACTGGATCATACAACAACTTCTTCCGAATGTTGGACCGCACCCAGCGGCGAGATGTCACCCTGGAGGCTTCGCGCGAGAGCTGCAAGCCCCGGCAGGTCCTCAAGCCGCGCAGGGTTTGCGCAGGAGGCAAGCGGAAGAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTACACACCGCCTGGCACCCGCAGGAAAACATCATCGCAGTGGCAACCACCAACAACCTCTACATCTTCCAGGAAAAAGTGAACTAATACTGTCATCACGGGGAAAGAAAACCTCCGAACCTCTCTCGCTCTATGTGaaaccaacaaaaaaaagttgaactagcAAGAATCATTTCTGTGACAACCACCGTCATCACATAAACCAACCTTGGCCTACTCCAGGACAGGATGAACTAGTTGAGCCAACTAGCGGCTGCCAATACTGAGATAACTGGTTCAAGCTGGTCTGGAGAAGAAGCGCAACCTGGCTTTGGCCTCTGTGGCACCATGACATGCGCCTTGCACTGGTGATGTTGTGCCAACCTGTGTCTGTACCCTCCATCCCTTTTCCCCTTTACCCACAAGTCAGTCCGAGCCCAGGGATGAAATGGGCAGCAAAGCTCTGACAGATttcaaccagtttttttttttctttagtttttttttctttcatttttttggcTTCGGTTTCTTCAAGGTGTCTGTATAAAAACTAATTTGAACTC
>TCONS_00003963
GGGGAACTGTCAACTCCATTCGTTATGCCAGTCATACTTGCtattattatactgtatgtggaaataggctttttttcatgatttttcagCATGAGTTGTATTGCTGGTCTTGCACTTGGGGAgaaattttataatattataattgcaGATAAAACTATAAAGTTGTGGAAGATCAGCGAGCGGGACAAGAGACCAGAGGGATACAATCTGAAAGAAGAGGATGGACGCTATAGAGATGCTTCTACCATCACAACTCTACGGGTGCCAGTATTTAGGCCTATGGATCTCATGGTGGAGGCCAGTCCGCGAAGGGTCTTTGCCAACGCTCACACCTACCACATCAACTCCATCTCGGTCAACAGCGACAATGAGACCTATCTGTCTGCAGACGACCTGCGCATTAACTTGTGGCACTTGGAGATCACAGACCGCAGCTTCAACATTGTGGACATTAAACCAGCCAACATGGAGGACCTAACGGAGGTTATCACAGCCGCAGAGTTTCACCCTCACCAATGTAACACGTTTGTCTACAGCAGCAGCAAAGGCACCATCCGCCTGTGTGA

Function

symbol description
ppp2r2ab Predicted to enable protein phosphatase regulator activity. Acts upstream of or within blood vessel lumenization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2A (protein phosphatase 2 regulatory subunit Balpha).

GO:

id name namespace
GO:0070262 peptidyl-serine dephosphorylation biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005829 cytosol cellular_component
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5474 Predicted to enable protein phosphatase regulator activity. Acts upstream of or within blood vessel lumenization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2A (protein phosphatase 2 regulatory subunit Balpha).

Ensembl:

ensembl_id ENSDARG00000006624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003961 False 2199 mRNA 0.48 11 18877362 18906672
TCONS_00003962 False 1890 mRNA 0.49 10 18878856 18906671
TCONS_00003963 True 566 processed_transcript 0.46 3 18892047 18896604

Neighbor

gene id symbol gene type direction distance location
XLOC_002045 AL928714.1 coding upstream 74927 18798927 ~ 18802435 (+)
XLOC_002044 CR388008.1 coding upstream 317949 18557102 ~ 18559413 (+)
XLOC_002043 NA coding upstream 594927 18240550 ~ 18282435 (+)
XLOC_002042 NA coding upstream 805856 18007123 ~ 18071506 (+)
XLOC_002041 prkab1a coding upstream 931199 17936441 ~ 17946163 (+)
XLOC_002047 bnip3lb coding downstream 4480 18911152 ~ 18935945 (+)
XLOC_002048 dpysl2b coding downstream 45599 18952271 ~ 18992471 (+)
XLOC_002049 tmem230a coding downstream 110474 19017146 ~ 19021576 (+)
XLOC_002050 igsf9a coding downstream 120316 19026988 ~ 19093808 (+)
XLOC_002051 lrrtm4l1 coding downstream 404016 19310688 ~ 19394491 (+)
XLOC_002040 BX927277.1 non-coding upstream 987159 17890089 ~ 17890203 (+)
XLOC_002035 dre-mir-218b non-coding upstream 1182022 17695265 ~ 17695340 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 676617 19583289 ~ 19589733 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 695662 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 1470416 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 1541795 20448467 ~ 20452630 (+)
XLOC_002066 NA non-coding downstream 1595104 20501776 ~ 20502178 (+)

Expression


Co-expression Network