XLOC_002047 (bnip3lb)


Basic Information

Item Value
gene id XLOC_002047
gene name bnip3lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18911152 ~ 18935945 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003964
TCTGAGCTGCTGCTAACAGTCTATTGCAAGCCGCCCTACACAGAGCCACCATGTCCGACGCTGCTGCTCCAGCGGACAACAACGGGGAGCCTGGATTAAACGggtCCTGGGTAGAGCTGGAGATGAACAGAAATGCTGCGTCTCTCTCTTCCTCCAGCGCTTCAGTGCCACCGCCTCTCGCGCAGGTTGTAGAGGAGGATGATGGGATGGTAGGGGGGTTGGAGCACGTTCCCTCCTCTTCATCCATTCACAATGGCGACATGGAGAAAATCCTGCTAGATGCCCAGCACGAGTCCAGCCGAAGTAACTCCTCATGTGACAGTCCTCCTCGACCTCACAGTCCTCAGGATGAAGGGCAGATCATTTTTGACGTGGACACGAGGAGAGACAGTCAGGAGGAGGTCATGGAGAAGATCAGAGATGATGACATCTTAATGAAGGATTCAGACCGCATGGCAGACTGGTCGAGTAGACCAGAGAATATTCCTCCTAAGGAGTTTCATTTCCGGCACCCACGGCGTTCAGTGACTCTTAGCATGAGGAAGACTGGAGCCATGAAGAAAGGAGGCATCTTCTCTGCTGAGTTTCTCAAAGTGTTTATCCCATCGCTGCTTCTGTCCCACATCCTGGTCCTGGGTCTCGGGGTCTATATCGGGAAAAGACTGACAACTCCCCCTGCTAGCTCCATTTGAGCAGTGATCAGATCAAGTGCCTCAGGCAAGGCCCGGCTGGATCAGGAGGAAAGTTGCAGTTTGTATGAAGAAGCCCCTGCtgcccctttcttccccattttacACTACCTATCTTTTCTTCTATTTTAATATTTCCTTTATTCATTCTTTTCATGTTGAGAAGCATTCGTGATAAACTTCTCTTCATTCCCCTTTTATCTTCTTCTTTTTATCATGTCCTGAATCCCTTTTTATTTGTGAGTGATCTAATATTCCCTctttaatagttatttttttaagtatatggGGCTTTTGTGTGAAACCAAATTTGCACATGCTAGTTCTGCACTAGCAGTGATGTCTATTTAAAATCCAGTCAAATGACCTTCAAATGGGCCGCTCACATAATGATATCCCTAGTTTTCACGCCCATTATGGGATCGACCAAATTATTGACTTATTGAAGTTACACTGAGCATGCCTGAGTGCTatataagattttatttattactacaAATGCTATCCATttagatttctttttatttacttcaaTGATGGAAAGCCTGAAGGTTGAACtctgcagtgttttgaaaaggaTAGGGTTTTCTGTAGACATCATATTCATCTGGTGAAGATGGTTGATCAGTAGCTCCGTTTAGAACTTACAATTTTTATACCAAATTTTGCAGAATCTTTTCTGACAGAGATGGCACCTGTTACATTGAAACGTCGGAtacatattttcattttgtaatatttcaTCTCATAAGCAGAGGTAAAAACTGGTTTGGATGGGGCTGACGGATACCTgtatgaaaaaaaagttattttatttgtcagtgtttatttgtttgttgtcatttttgttGTCTTGTGTTTTCCACCATACATATCAGGACCTGGTGGTTCATAACTAGGCTTTAACAACACAGCCTACTTTGCAATACCACACAATTTAACATTGACTATCGTATACAAAGCCAACTCGAAAAATAGCTTCAGTTTTTAGTCATGCTGTCAAACTTTCTGAAAATTTGATCATCACTTTCACTCTGGTCTAGCATTTCCATGCTGATGAAAATGGCACAAGAGAAACCTTTCTTCAGTTTATTGGATTGGATTGtttagtgtgttttattgttgtttactGAAGTTCGTGTCGTTTTAAACTTGTACGTTGTGTTCTTTTTCTGTGAAAAGATTAAGGAGAAGATTTGAACAATGTGCATGCTGCTCTTTTTCTGTACAATCAAGAGAAAGGAGCATGGATTTCTTCACGTTTCCTTTTTCTACTTCAAAAATGATGGCAGGGTTGTTATTCTCGTGTGCACTATTTACCTCGCACACATGCCGAGTCACACATTTATCCAACACTAACACTCCAGCTCCTGTCATCCTGGACATGAACATCTGGGAACATTGTTTTCAGTCCTGAAGCGAAATTTCCTCAAGTCAAGTTGTGTCtctttttaagtgtgttttggatCTCCTTTGGTCTCCATTGTTCATCTTGAGGATCTCCTCAAACACAGCTGCCAAAAACCGACTGAGAGCTCAACTCTTATGAACTCTGTGCCTCGTTTCCTTAATCACGTTTGATACAGCGTCCTGTCATCATGTGCGTTTCCTGTGCCACAagcttttctttttgttgttttggAGCAGCATGACTTTTGGAAGGTTTCTCATatgctttgatgttttttttttttttttttttttaattcttaaacaACCAAGGCAAACAAGAAGAGAATGTACAGGATAGTTAAAGgggttttagtttgtttatatcgGCATTCAGAATGTGGATGTCAAGAAGTGGGTTTTTGATCCTCTACAGAGATACTTTCTTCAGACTGCCATGCAATGTCTAAAATGAATTGTATTAAATTTAATGATTTTGCAGACCCTTTTTCCTCCCCTGTTGGACAATGACAAgttttcaaattaaattttaaacagaACAA
>TCONS_00003965
TTGCAAGCCGCCCTACACAGAGCCACCATGTCCGACGCTGCTGCTCCAGCGGACAACAACGGGGAGCCTGGATTAAACGggtCCTGGGTAGAGCTGGAGATGAACAGAAATGCTGCTTTCTCAAAGTGTTTATCCCATCGCTGCTTCTGTCCCACATCCTGGTCCTGGGTCTCGGGGTCTATATCGGGAAAAGACTGACAACTCCCCCTGCTAGCTCCATTTGAGCAGTGATCAGATCAAGTGCCTCAGGCAAGGCCCGGCTGGATCAGGAGGAAAGTTGCAGTTTGTATGAAGAAGCCCCTGCtgcccctttcttccccattttacACTACCTATCTTTTCTTCTATTTTAATATTTCCTTTATTCATTCTTTTCATGTTGAGAAGCATTCGTGATAAACTTCTCTTCATTCCCCTTTTATCTTCTTCTTTTTATCATGTCCTGAATCCCTTTTTATTTGTGAGTGATCTAATATTCCCTctttaatagttatttttttaagtatatggGGCTTTTGTGTGAAACCAAATTTGCACATGCTAGTTCTGCACTAGCAGTGATGTCTATTTAAAATCCAGTCAAATGACCTTCAAATGGGCCGCTCACATAATGATATCCCTAGTTTTCACGCCCATTATGGGATCGACCAAATTATTGACTTATTGAAGTTACACTGAGCATGCCTGAGTGCTatataagattttatttattactacaAATGCTATCCATttagatttctttttatttacttcaaTGATGGAAAGCCTG

Function

symbol description
bnip3lb Acts upstream of or within heart looping; negative regulation of heart contraction; and positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in several structures, including brain; optic cup; pectoral fin bud; pronephric duct; and somite. Orthologous to human BNIP3L (BCL2 interacting protein 3 like).

GO:

id name namespace
GO:0097345 mitochondrial outer membrane permeabilization biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0045822 negative regulation of heart contraction biological_process
GO:0043067 regulation of programmed cell death biological_process
GO:0051607 defense response to virus biological_process
GO:0001947 heart looping biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040325-1 Acts upstream of or within heart looping; negative regulation of heart contraction; and positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in several structures, including brain; optic cup; pectoral fin bud; pronephric duct; and somite. Orthologous to human BNIP3L (BCL2 interacting protein 3 like).

Ensembl:

ensembl_id ENSDARG00000028067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003964 False 2641 mRNA 0.41 6 18911152 18935945
TCONS_00003965 True 769 processed_transcript 0.42 4 18911175 18934541

Neighbor

gene id symbol gene type direction distance location
XLOC_002046 ppp2r2ab coding upstream 4480 18877362 ~ 18906672 (+)
XLOC_002045 AL928714.1 coding upstream 108717 18798927 ~ 18802435 (+)
XLOC_002044 CR388008.1 coding upstream 351739 18557102 ~ 18559413 (+)
XLOC_002043 NA coding upstream 628717 18240550 ~ 18282435 (+)
XLOC_002042 NA coding upstream 839646 18007123 ~ 18071506 (+)
XLOC_002048 dpysl2b coding downstream 16326 18952271 ~ 18992471 (+)
XLOC_002049 tmem230a coding downstream 81201 19017146 ~ 19021576 (+)
XLOC_002050 igsf9a coding downstream 91043 19026988 ~ 19093808 (+)
XLOC_002051 lrrtm4l1 coding downstream 374743 19310688 ~ 19394491 (+)
XLOC_002052 vsig8a coding downstream 589894 19525839 ~ 19551118 (+)
XLOC_002040 BX927277.1 non-coding upstream 1020949 17890089 ~ 17890203 (+)
XLOC_002035 dre-mir-218b non-coding upstream 1215812 17695265 ~ 17695340 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 647344 19583289 ~ 19589733 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 666389 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 1441143 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 1512522 20448467 ~ 20452630 (+)
XLOC_002066 NA non-coding downstream 1565831 20501776 ~ 20502178 (+)

Expression


Co-expression Network