LOC118936272 (LOC106596174)


Basic Information

Item Value
gene id LOC118936272
gene name LOC106596174
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13864 ~ 18096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934821.1
TCTGTTCCTAGCATCTGTAGTGTGTAGTTCATCTCCCCTCAGTAACCACCTGGAGAATGTAATCTAATGTGTAATTCATCTCCCCTCAGTAACCACCTGGAGAAGTCTCTGCAGCTCCTGATGGACAGAGTGGATGATATGAGTCAGGACATTGTCAAGTACAACACCTACAGCCGTAACCTCAGCAAGCAACAGCAGCAGaaacaccagtataTCCAGCGACGCCAGCAGGAGAATgctcagagacagaccagaggagAGACTCCTCTACCAGAGGAAGATGTCTCCAAGATGTTCAAACCACCACAGCCCCCTCCTCGCATGGACACTCTCCTCATCGCAGGACAGATTAACAATTACTGCCAGAATGTGAAGGAGTTCACCTCCCAGAACCTCGGCAAACTCTTCATGGCCGAGGCTCTTCAGGGACACAACAGCTAAAGGAGAAGACGTGAGGAGGAACtaaaacacacaggagagaaccCCCCTTTCACCCAATCAGAATGATCCATACAGGCCTGTGTTCTAAATGGTACCCTCTTCCcttcatatagtgcactactggtcaatactagtacactatatagggaatagggtgtaattttggGATGCATCCTATGATTGGAGGATTGATGTGATGCTGTTAGATTTGTTAAGAAATTAAAATAAATGTGACCAacattattattcattattaagAGAACATGTTCCACGTTCTCCAAAAGATGAGTTATTTGAATATTATTGTAACTTTTAATAAACATCTTTGCGTCTCCTCACA

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit H

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934821.1 True 781 mRNA 0.44 3 13864 18096

Neighbor

gene id symbol gene type direction distance location
LOC110512917 csmd3 coding downstream 131086 149182 ~ 672194 (+)
zgc:110410 LOC106594189 coding downstream 696634 714730 ~ 722393 (+)
LOC118937316 LOC106573240 coding downstream 706695 724791 ~ 731551 (+)
cmc1 cc068 coding downstream 842363 860459 ~ 872515 (+)
LOC110506977 LOC106595099 coding downstream 887480 905576 ~ 908576 (+)
G103771 NA non-coding downstream 803 18899 ~ 19319 (+)
G103772 NA non-coding downstream 2565 20661 ~ 20865 (+)
G103774 NA non-coding downstream 7608 25704 ~ 30038 (+)
G103778 NA non-coding downstream 13801 31897 ~ 32592 (+)
G103786 NA non-coding downstream 31176 49272 ~ 49615 (+)
G103851 NA other downstream 156900 174996 ~ 181022 (+)
G104092 NA other downstream 671950 690046 ~ 701271 (+)
G104761 NA other downstream 1134965 1153061 ~ 1153749 (+)
tgfbr2b LOC106606173 other downstream 1291182 1309202 ~ 1390936 (+)

Expression


Co-expression Network