eomesb (eomesb)


Basic Information

Item Value
gene id eomesb
gene name eomesb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 806150 ~ 813190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281390.1
aaaacaaggagaggagagaagatgcgTTGAAATACTTACAAATGAACGATCTCTcttattttttattattgtgattgaaaacaaaaaaatatatgtcgcgtatttatttatttccaaaTTGCAGCCTATATtcgtatttttaaaaaaaatgtattaggtcTATTTATTAGCCTCATTTGAAAACGAAGTAGGCCAAACAAGGACCAAGATTGGATGCAGAACTTTTCAAAAAGATCTCTGGTTCCGGTGCGTCTCCAACCCTTCTGACAGAAGCCCCGGAGAAGAATTGGAAGAAAAAACAGAAGACCGTGGGACCGAATAATATTTAATCTTaacctgacaaaaaaaaaattaccatgctcggagagggagagagcaacacCTTTCCTTCCCCCAAGGACGCCCCCCGCCCGGAGGAGAAGAGAAAGTCCCCGGTGGTGGGTGCAGATGACCCGGCTATGGCCGGCAGCGCTAGCCGATACACCGACGGACTCGGGCCAGACCGCTATTATATCTCACCCCCATCCAAGCAAACTGGAGACATGGCGAGTCCATGTTCTTTATTCCCTTATTCTCAGTCCGGTACCGTTTACACGGCTTCCGGTGGATCCAGATATTCGACATCGCTTCACTTCAGCTCGGTGTTGCCTCCCACGGGATTCTCCTCGGCGGGGCGTAATCAGTTCGGTTCGGCCTACCAGTTAGGACAGGGTGGGTGTCTCTACCCTCCATACAGCACCGGCTCCGGGATCGGCTCGGTGCCCCTACCCTCAGGCACGGGGGTGAGGGCTCAGGTCTACCTCTGTAACCGGCCTCTCTGGCTCAGGTTCCACCGTCATCAGACCGAGATGATTATCACCAAACAGGGCAGGCGGATGTTCCCGTTCCTGGGTTTCAACCTGATGGGTCTGAATCTCTCTGCTCATTACAACGTGTTTGTGGAGGTCATGCTCGCGGACGCCAACCACTGGAGGTTCCAAGGCGGGAAATGGATCACCTGTGGAAAGGCGGACAATAATATGCAGGGAAACAAAATGTACGTCCATCCTGAATCTCCCAACACGGGAGCACACTGGATGAGACAGGAGATCTCCTTCGGCAAACTGAAGCTCACCAACAACAAAGGAGGCAGTAACAACAACGCACAGATGATAGTTCTTCAGTCTCTTCATAAGTATCAGCCGCGGCTACACATTGTAGAGgtgacagaggggttggaggacATGAGCAGTGACCCAAAGACCCAGACCTTCACCTTCCCTGAGAACCAGTTTATAGCCGTCACGGCCTATCAGAACACCGATATCACACAACTGAAAATTGACCACAACCCGTTTGCAAAAGGATTCAGGGATAACTATGATTCGATGTACACAGCTCCAGAGGGTGACCGACTGACCCCCTCCCCCACCGACTCCCACCGCTCCCACCAGATCGTCCCAGGTGCTCGCTACGCCATGCAGCCTTTCTTCCAGGACCAGGTCATCAACAACCTGCCCCAGAACCGCTTCTACAACAGCGAGAGGACAGTACCCCAGACCAACAGTCTCTTTTCCCCTCAGCCAGAGGACAGCGCCTCCCAGAGGTGGTTTATCTCCATGCAACAGGGAGGAGCTGGCCCCAACAAACTGGATCTCAGTTCCTATGAAGGGGACTACTCTAGCAGCCTGCTCCCTTACGGGATTAAATCCCTGCCTCTACAGAACTCCCACGCTCTCACCTACTACCCAGACTCTCCTTTCACTTCCATGGCATCAGGATGGGGCTCTAGAGGATCTTACCAGAGAAAGGTGACCACGGGCCTGCCGTGGTCCCCTAGACCCAGCCCCACTGGGTTCCCAGAGGACCAGCTGTCTGTGCCTGACAAAGACAAGGCTCAGGGGGAAGAGATCAACGGCAGTAGTGTTGGTAACATAGCTTCAACGTGGACTGATACTCACTCTTCCACGCTGGGCCTGGAGAAGGCTGACTCTGGGGTCGTGGTGTGTAAAAGGAGACGTACGCCTCTGAGTGGACCCGGCACAGAGAACTCCCCCACTGTAAAGGGTGAGAGTCTGACTGCCACTGACTCCTACAGCAAAGACTCATCCGTTTCTAAAAGTATGGCTTACTATTCCTTCTACACAAGCCCTTAATTATCTTGTCACCTTTTAAAAAATCTTTGATGCCAGGGGTTTTCCCTCTTTTCTTATTGGTTGGAAGTTCCAAGTCTGTCGATATTCTGCCAAACCAGTGCCACCTACACCAACCTTATTCACCAGGGTTTTTTAACAGCATGTGACTGGACAGTGTGATTTTTTAAAACTAACAATCTATGATGGACCGTGGGAATTGTTCTTAAAGTGCCAGAGTATTCGATATAACCCAGTGGGGTTGTGCTATAATGTATATTGTCCTTCAATGTACCCAGTTGATGTGTGTTTGTACAAAATATGCCTTCACATTGaagttttttgtttttacagaCTCATTTATTGAAGGCTTGTGAATATGATATTTGTGCACTGTAACATGTGAAGGGTCTTGTATCAAATAGACTGTACATTGTTAagagttttgttgttgttgttgttgttttttttcttaataaacaaacaca

Function

symbol description
eomesb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in CD8-positive, alpha-beta T cell differentiation involved in immune response; embryonic morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in leukocyte and lymphocyte. Orthologous to human EOMES (eomesodermin).

NR:

description
eomesodermin-like protein b

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281390.1 True 2599 mRNA 0.49 7 806150 813190

Neighbor

gene id symbol gene type direction distance location
LOC110516483 LOC106573240 coding downstream 15279 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 129638 672497 ~ 676512 (-)
LOC118937314 NA coding downstream 298081 423319 ~ 508560 (-)
LOC118937313 NA coding downstream 322960 476561 ~ 484071 (-)
azi2 azi2 coding upstream 66628 879818 ~ 905418 (-)
LOC118937319 NA coding upstream 502474 1314565 ~ 1316245 (-)
LOC110515934 gadl1 coding upstream 614061 1427251 ~ 1457133 (-)
LOC110515405 LOC106590999 coding upstream 760212 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 889761 1702951 ~ 1704863 (-)
G104588 NA non-coding downstream 19364 786100 ~ 786786 (-)
G104571 NA non-coding downstream 63118 742125 ~ 743032 (-)
G104564 NA non-coding downstream 88682 716673 ~ 717468 (-)
G104560 NA non-coding downstream 90371 715267 ~ 715779 (-)
G104557 NA non-coding downstream 91093 708159 ~ 715057 (-)
G104620 NA non-coding upstream 52832 866022 ~ 867915 (-)
G104621 NA non-coding upstream 54563 867753 ~ 868219 (-)
G104603 NA non-coding upstream 58121 871311 ~ 872653 (-)
G104625 NA non-coding upstream 63442 876632 ~ 876918 (-)
G104602 NA non-coding upstream 64222 877412 ~ 878655 (-)
G105220 NA other upstream 520796 1333986 ~ 1342335 (-)
G105285 NA other upstream 727540 1540730 ~ 1541706 (-)
G105340 NA other upstream 828077 1641267 ~ 1641732 (-)
G105427 NA other upstream 1099402 1912592 ~ 1917188 (-)

Expression


Co-expression Network