LOC110506977 (LOC106595099)


Basic Information

Item Value
gene id LOC110506977
gene name LOC106595099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 905576 ~ 908576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934970.1
CTCTCCCCTGCAAAGTTCGACACTCGATTATTTTAGCCTTTGCCGGGTAGCTAGCAAAATGCTAAATTGGCGAGCTGGCTAGCTAAATTCGCTAGTAGTAGTGATGCACATTAGCGATTCAATCTGTGtaaggttaaatacatttattcggagatagctagccagccagtaaATTACATATTAATATATTTTTGAAACAACTTGAACGAAGAGGGACGTTAGCTAGGCGCTAAtaagaattattatttttttaatccaaaACTAGACTGTTGTTAgccagctggctaacgttagctagaatCATGACGATCTAAATGTGTGGATCATTAGCAAAGGCCATTCATTCATTGTCTAGCTAGTAGCTCAGTATATTCAAACATATTTGCTAGCAAGTAGTCTTAGCAAATACATTATAGGTCGCTGACACTGATTTATTGTCTCTATGACAATATCAGATGGGCTAGCTAGCCAACATGTTTGTGTTTGCTTGTTTAGGTCAGCCAAGATCGCTCAGTTCAGCTGTAAAAAAAATGAGTCTTCTTCCAGACCTGAATGCCAATGAGGATGAAACATCCTACTATGCAGACAAGACCTGGGTCCAGTGCGAGTCTCCCAGATGTCTAAAGTGGAGACTGGTACCAAAGGGTGATGAAACGGTGGCTGAGCCGGACCATGGCAAGTCCTGGCACTGTCAAAATAACCCAGACCCTCTGTTCAGCCACTGCAGCATCCCTCAGGGCCCTTTCCCCAACAACTCCCAGTTCAAGGAACATGGCCTGAAGGTTGTGTACTCCGGGCTGCCTGTCGGGAGCCTGGTGCTGGTGAAAGCATGTAACTGGCCATGGTGGCCAGCCATTCTAAGTCCAGACCCCAACGTGGAGGAGTATGTGAGGCTGGACAGCGAGGGTTATGTGGAGCACTACCATGTTGAGTTCCTGGGGAAACCTCATACCAGATTCTGGGCTGCTGCCAAGCATGTAGAACTCTACCACAACTCCTCCACTAAACCCAGATACAGGAACCTGCGAGGCGCTATGAGGAAGTCGTATGAGGTGGCGATGGAGGAGGTGGCTAAGGTCAGGGAGATGGGCTGTGAGGAGAGACTGCAGATCAGCCACTTCCAGCCACAGGATTCGGGACCAGAGGATTCGGATGTGGGATGCCGGCATCGAGGAGGACGGAGACACTCTGATCATAGAAGGGTTCAGGTTTGACAGCGCCACCTGTCTGGAGGACCTGATGACTGCAGGAAACAAGAAAtaaagattttttattttttaacaagaTATTTCCAgatagttttttttcttcaagAGATGTTAATCCTTTCCCCTTAAAAGTGCTTTATATTGTATGATATTTAATTGAAATGTTATATTTTTCAAAAATATTTGTTTACTGTGGTCATTGTTGAAGACAATATACATTGTGGTGACTGGTAGTATGAAGaagttgttgttgttat
>XM_021586856.2
TGCAAAGTTCGACACTCGATTATTTTAGCCTTTGCCGGGTAGCTAGCAAAATGCTAAATTGGCGAGCTGGCTAGCTAAATTCGCTAGTAGTAGTGATGCACATTAGCGATTCAATCTGTGtaaggttaaatacatttattcggagatagctagccagccaGTCAGCCAAGATCGCTCAGTTCAGCTGTAAAAAAAATGAGTCTTCTTCCAGACCTGAATGCCAATGAGGATGAAACATCCTACTATGCAGACAAGACCTGGGTCCAGTGCGAGTCTCCCAGATGTCTAAAGTGGAGACTGGTACCAAAGGGTGATGAAACGGTGGCTGAGCCGGACCATGGCAAGTCCTGGCACTGTCAAAATAACCCAGACCCTCTGTTCAGCCACTGCAGCATCCCTCAGGGCCCTTTCCCCAACAACTCCCAGTTCAAGGAACATGGCCTGAAGGTTGTGTACTCCGGGCTGCCTGTCGGGAGCCTGGTGCTGGTGAAAGCATGTAACTGGCCATGGTGGCCAGCCATTCTAAGTCCAGACCCCAACGTGGAGGAGTATGTGAGGCTGGACAGCGAGGGTTATGTGGAGCACTACCATGTTGAGTTCCTGGGGAAACCTCATACCAGATTCTGGGCTGCTGCCAAGCATGTAGAACTCTACCACAACTCCTCCACTAAACCCAGATACAGGAACCTGCGAGGCGCTATGAGGAAGTCGTATGAGGTGGCGATGGAGGAGGTGGCTAAGGTCAGGGAGATGGGCTGTGAGGAGAGACTGCAGATCAGCCACTTCCAGCCACAGGATTtgttgagTCAGGCTCAGAGGTTAATGCATGCTATTGAGAGGATGCTCAGACAATACTCCAACCAGCAGGACAACCAGGGCAAGCGGGACCAGAGGATTCGGATGTGGGATGCCGGCATCGAGGAGGACGGAGACACTCTGATCATAGAAGGGTTCAGGTTTGACAGCGCCACCTGTCTGGAGGACCTGATGACTGCAGGAAACAAGAAAtaaagattttttattttttaacaagaTATTTCCAgatagttttttttcttcaagAGATGTTAATCCTTTCCCCTTAAAAGTGCTTTATA
>XM_036934948.1
GACACTCGATTATTTTAGCCTTTGCCGGGTAGCTAGCAAAATGCTAAATTGGCGAGCTGGCTAGCTAAATTCGCTAGTAGTAGTGATGCACATTAGCGATTCAATCTGTGtaaggttaaatacatttattcggagatagctagccagccagtaaATTACATATTAATATATTTTTGAAACAACTTGAACGAAGAGGGACGTTAGCTAGGCGCTAAtaagaattattatttttttaatccaaaACTAGACTGTTGTTAgccagctggctaacgttagctagaatCATGACGATCTAAATGTGTGGATCATTAGCAAAGGCCATTCATTCATTGTCTAGCTAGTAGCTCAGTATATTCAAACATATTTGCTAGCAAGTAGTCTTAGCAAATACATTATAGGTCGCTGACACTGATTTATTGTCTCTATGACAATATCAGATGGGCTAGCTAGCCAACATGTTTGTGTTTGCTTGTTTAGGTCAGCCAAGATCGCTCAGTTCAGCTGTAAAAAAAATGAGTCTTCTTCCAGACCTGAATGCCAATGAGGATGAAACATCCTACTATGCAGACAAGACCTGGGTCCAGTGCGAGTCTCCCAGATGTCTAAAGTGGAGACTGGTACCAAAGGGTGATGAAACGGTGGCTGAGCCGGACCATGGCAAGTCCTGGCACTGTCAAAATAACCCAGACCCTCTGTTCAGCCACTGCAGCATCCCTCAGGGCCCTTTCCCCAACAACTCCCAGTTCAAGGAACATGGCCTGAAGGTTGTGTACTCCGGGCTGCCTGTCGGGAGCCTGGTGCTGGTGAAAGCATGTAACTGGCCATGGTGGCCAGCCATTCTAAGTCCAGACCCCAACGTGGAGGAGTATGTGAGGCTGGACAGCGAGGGTTATGTGGAGCACTACCATGTTGAGTTCCTGGGGAAACCTCATACCAGATTCTGGGCTGCTGCCAAGCATGTAGAACTCTACCACAACTCCTCCACTAAACCCAGATACAGGAACCTGCGAGGCGCTATGAGGAAGTCGTATGAGGTGGCGATGGAGGAGGTGGCTAAGGTCAGGGAGATGGGCTGTGAGGAGAGACTGCAGATCAGCCACTTCCAGCCACAGGATTtgttgagTCAGGCTCAGAGGTTAATGCATGCTATTGAGAGGATGCTCAGACAATACTCCAACCAGCAGGACAACCAGGGCAAGCGGGACCAGAGGATTCGGATGTGGGATGCCGGCATCGAGGAGGACGGAGACACTCTGATCATAGAAGGGTTCAGGTTTGACAGCGCCACCTGTCTGGAGGACCTGATGACTGCAGGAAACAAGAAAtaaagattttttattttttaacaagaTATTTCCAgatagttttttttcttcaagAGATGTTAATCCTTTCCCCTTAAAAGTGCTTTATATTGTATGATATTTAATTGAAATGTTATATTTTTCAAAAATATTTGTTTACTGTGGTCATTGTTGAAGACAATATACATTGTGGTGACTGGTAGTATGAAGaagttgttgttgttat
>XM_021586864.2
CCGGGTAGCTAGCAAAATGCTAAATTGGCGAGCTGGCTAGCTAAATTCGCTAGTAGTAGTGATGCACATTAGCGATTCAATCTGTGTCAGCCAAGATCGCTCAGTTCAGCTGTAAAAAAAATGAGTCTTCTTCCAGACCTGAATGCCAATGAGGATGAAACATCCTACTATGCAGACAAGACCTGGGTCCAGTGCGAGTCTCCCAGATGTCTAAAGTGGAGACTGGTACCAAAGGGTGATGAAACGGTGGCTGAGCCGGACCATGGCAAGTCCTGGCACTGTCAAAATAACCCAGACCCTCTGTTCAGCCACTGCAGCATCCCTCAGGGCCCTTTCCCCAACAACTCCCAGTTCAAGGAACATGGCCTGAAGGTTGTGTACTCCGGGCTGCCTGTCGGGAGCCTGGTGCTGGTGAAAGCATGTAACTGGCCATGGTGGCCAGCCATTCTAAGTCCAGACCCCAACGTGGAGGAGTATGTGAGGCTGGACAGCGAGGGTTATGTGGAGCACTACCATGTTGAGTTCCTGGGGAAACCTCATACCAGATTCTGGGCTGCTGCCAAGCATGTAGAACTCTACCACAACTCCTCCACTAAACCCAGATACAGGAACCTGCGAGGCGCTATGAGGAAGTCGTATGAGGTGGCGATGGAGGAGGTGGCTAAGGTCAGGGAGATGGGCTGTGAGGAGAGACTGCAGATCAGCCACTTCCAGCCACAGGATTtgttgagTCAGGCTCAGAGGTTAATGCATGCTATTGAGAGGATGCTCAGACAATACTCCAACCAGCAGGACAACCAGGGCAAGCGGGACCAGAGGATTCGGATGTGGGATGCCGGCATCGAGGAGGACGGAGACACTCTGATCATAGAAGGGTTCAGGTTTGACAGCGCCACCTGTCTGGAGGACCTGATGACTGCAGGAAACAAGAAAtaaagattttttattttttaacaagaTATTTCCAgatagttttttttcttcaagAGATGTTAATCCTTTCCCCTTAAAAGTGCTTTATA

Function

NR:

description
zinc finger CW-type PWWP domain protein 2-like

GO: NA

KEGG:

id description
K24690 ZCWPW2; zinc finger CW-type PWWP domain protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934970.1 False 1465 mRNA 0.45 4 905576 908576
XM_021586856.2 False 1097 mRNA 0.49 6 905584 908460
XM_036934948.1 False 1530 mRNA 0.45 5 905594 908576
XM_021586864.2 True 1022 mRNA 0.50 6 905618 908460

Neighbor

gene id symbol gene type direction distance location
cmc1 cc068 coding upstream 33062 860459 ~ 872515 (+)
LOC118937316 LOC106573240 coding upstream 179601 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 183183 714730 ~ 722393 (+)
LOC110512917 csmd3 coding upstream 233382 149182 ~ 672194 (+)
LOC118936272 LOC106596174 coding upstream 887480 13864 ~ 18096 (+)
LOC118936923 NA coding downstream 60040 968616 ~ 969528 (+)
rbms3 rbms3 coding downstream 114885 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding downstream 313554 1222130 ~ 1224904 (+)
tgfbr2b LOC106606173 coding downstream 400626 1309202 ~ 1390936 (+)
LOC118937323 NA coding downstream 515740 1424316 ~ 1426453 (+)
G104179 NA non-coding upstream 8170 886962 ~ 897406 (+)
G104138 NA non-coding upstream 26912 878059 ~ 878664 (+)
G104128 NA non-coding upstream 125846 778189 ~ 779730 (+)
G104116 NA non-coding upstream 147805 756786 ~ 757771 (+)
G104114 NA non-coding upstream 151248 753699 ~ 754328 (+)
G104181 NA non-coding downstream 482 909058 ~ 911619 (+)
G104183 NA non-coding downstream 3217 911793 ~ 912016 (+)
G104184 NA non-coding downstream 4017 912593 ~ 912844 (+)
G104185 NA non-coding downstream 5607 914183 ~ 914388 (+)
G104186 NA non-coding downstream 6162 914738 ~ 915183 (+)
G104092 NA other upstream 204305 690046 ~ 701271 (+)
G103851 NA other upstream 724554 174996 ~ 181022 (+)
G104761 NA other downstream 244485 1153061 ~ 1153749 (+)
G105036 NA other downstream 790497 1699073 ~ 1700431 (+)
G105042 NA other downstream 800393 1708969 ~ 1710557 (+)
G106019 NA other downstream 1612140 2520716 ~ 2527972 (+)

Expression


Co-expression Network