rbms3 (rbms3)


Basic Information

Item Value
gene id rbms3
gene name rbms3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1023461 ~ 1231535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934979.1
ctcattccttccctcgctcctctcctcttctccctccttccttccctcactcctctcctcttcttttctcCTCCCCCCAGCTAGGAGAGGGTGAATCTGGGACTCCcattgagcagacagacagaagaacaGCTAGAGGTCCCATccatcactctctgtctgtctgtccctgtctctctctctcacgtctctctgTTTTGAGAAGAGGATCTTGCCTCCGCCCAGACCCAGGGATAGGAACCAGGGGTCCAGGCCAAGAGGGAGTCACTGTGTTACTGGAACCCAGCCAGAGAGACTCTGTCTCCTGCTACGGCCAGAAGGATTCCTGCTACATGGGTAAACACTTGGAACAGCAACAGATGTACCCCCAATACATCTACTATTACCCCCACTACCTCCAGACTAAGcagTCCTATGCCCCTCCCCCTTCCACCATGGtccctcccagtcccagccctaaCAACGGTcaccacagaggaggaggaggaggctgtaGTATGGAGCAGCTCAGTCAAACTAACCTGTACATCAGAGGACTGCCCTCTGGGACCAGTGACCAGGACCTCATCAAACTATGTCAACCATATGGGAAAATAGTGTCAACCAAGGCCATACTGGACAAGAACACTAATCAATGCAAAGgATATGGCTTTGTGGACTTCGACACCCAGACAGCAGCCCAGAAAGCTGTAGCCTCTCTAAAGGCCAGCGGAGTCCAGGCACAGATGGCCAAGcaACAGGAACAGGATCCCACTAACCTGTACGTTTCCAACCTGCCTGTGTCCATGGATGAGCAGGAGCTGGAGAACATGCTGAAACCGTTCGGTCACGTCATCTCAACACGGGTACTACGGGACGCCACCGGGGTCAGCAGAGGAGTCGGCTtcgccaggATGGAGTCAACAGAGAAGTGTGATGTGGTGATTCAACATTTCAATGGAAAGTTCCTGAAGACTCCTCCAGGCGTACCAGctcctgtAGAACCCCTACTCTGTAAGTTTGCAGATGGAGGACAGAAGAAGAGGCTGAACCAGAACAAGTACCCCCAAAACGGACAACCATGGACCAGAGATGGAGAGAGTGGCATGACGTTGACATATGACCCCACTGCAATGCATAATGGGTTCTACTCCTCTCCATACATCTCCACCAATAGGATGATAGCGCAGACATCCATCACTCCCTTCGTCGCTGCCTCACCCGTCTCCACGTACCAGGTCCAGAATACATCCTGGATGCCTCATCAACAGTATGTTATGCAACCTACCGGTGCTGTGATAACCCCAGCTATGGACCTCTCCATGCCCATGCAGCCCTCCAGTAtgatgggtcctataacacagCAGATTAACCACATGTCCCTGGGAAACACAGGAACCCAGTACATGTCTGCAGCAGCTGCTCCAATGCAAGGAGCCTACATTCCTCAGTACCCTGCAGTGCCTGACTCCGCCCTCACAGTGGACGCAGTGGTGACAGAGGACTCGCCCCAGACTGTACCCCCCTCCTCACAGGACCCTAACGGACAGCCACCCCTGGACAGCGACTCACCTGCCTACTCCTACCAACAGActaaATAACAGGAGGATGCCGAGTGATTTGTGTTTCCGCTAACTGCATTGCCTTGAGACAGCGGCTGCACTGAAgcactggagggatggagggaggaaaaaTACTGGATGACAAAAAGGAGGACAAAGAGAGACCGTTTTATCTTTGCACAGGCATCAAAAAAAGACTTTGTTTTAtctgtcctgagagagagagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag

Function

symbol description
rbms3 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Acts upstream of or within regulation of cartilage development and regulation of transforming growth factor beta receptor signaling pathway. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including brain; fin bud; hatching gland; otic vesicle; and tail bud. Orthologous to human RBMS3 (RNA binding motif single stranded interacting protein 3).

NR:

description
PREDICTED: RNA-binding motif, single-stranded-interacting protein 3 isoform X5

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934979.1 True 1855 mRNA 0.53 14 1023461 1231535

Neighbor

gene id symbol gene type direction distance location
LOC118936923 NA coding upstream 53933 968616 ~ 969528 (+)
LOC110506977 LOC106595099 coding upstream 114885 905576 ~ 908576 (+)
cmc1 cc068 coding upstream 150947 860459 ~ 872515 (+)
LOC118937316 LOC106573240 coding upstream 297486 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 301068 714730 ~ 722393 (+)
tgfbr2b LOC106606173 coding downstream 77667 1309202 ~ 1390936 (+)
LOC118937323 NA coding downstream 192781 1424316 ~ 1426453 (+)
stt3b stt3b coding downstream 224801 1456336 ~ 1564305 (+)
LOC118937324 NA coding downstream 338775 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 356647 1585657 ~ 1588650 (+)
G104690 NA non-coding upstream 14347 1008879 ~ 1009114 (+)
G104685 NA non-coding upstream 29561 993601 ~ 993900 (+)
G104684 NA non-coding upstream 30790 992465 ~ 992671 (+)
G104681 NA non-coding upstream 36833 986262 ~ 986628 (+)
G104677 NA non-coding upstream 41288 981926 ~ 982173 (+)
G104702 NA non-coding downstream 1990 1233525 ~ 1234133 (+)
G104789 NA non-coding downstream 18686 1250221 ~ 1252467 (+)
G104798 NA non-coding downstream 34921 1266456 ~ 1267051 (+)
G104894 NA non-coding downstream 40562 1272097 ~ 1272610 (+)
G104896 NA non-coding downstream 44497 1276032 ~ 1276273 (+)
G104092 NA other upstream 322190 690046 ~ 701271 (+)
G103851 NA other upstream 842439 174996 ~ 181022 (+)
G105036 NA other downstream 467538 1699073 ~ 1700431 (+)
G105042 NA other downstream 477434 1708969 ~ 1710557 (+)
G106019 NA other downstream 1289181 2520716 ~ 2527972 (+)
G106122 NA other downstream 1486426 2717961 ~ 2718525 (+)

Expression


Co-expression Network