LOC110515032 (LOC106606177)


Basic Information

Item Value
gene id LOC110515032
gene name LOC106606177
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1222130 ~ 1224904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594101.2
ttGGGACTGTATTTGAGTGGATTACTTTCCCTTTGTAAAGTGGAAGCTGTGGAGAGTAAAGTACAGAAGCTGTTACAGAACGAGGAGAGGCAGCGGTGTGAGATAATGGCATCCGGATCATCTCTACCAGAGGACAGGTTCTCCTGTCCCATCTGCTGTGACATCTTCAGGGATCCTGTCGTCCTGGCATGTGGCCACAGCTTCTGTGAAGTCTGTCAGCAGGAATACTGGGCAGATAAGAAACCTTGGAAATGTCCAGTTTGTAGGAGAAGATTTCCCGTAGCTATGACTCAACCTCCTCGTAACTTGGCGTTAAATGACGCGTGTGAGGCCTTCTTAcaggagagaaggcagagagctTCCGCTGGGTCTGAGATACAGGAcgggagtcagagagcttcatctggGTCTGAGATTCAGGAcgggagtcagagagcttcatctggCTCTGAGATACAGGACGgcagtcagagagcttcatctggGTCGGAGGTGCTCTGCAGTCTGCACGGTGAGAAATTCAAACTCTTCTGTCTGAAGGACAAACAGCCCGTCTGCTTGGTGTGTCGAGATTCAAAAGTACATAAATCTCACGACTGTGTCCCCGTAGACGAGGTTGTCCAGGACCTTAAGGAGGAACTCCACACCGCCCTGAAGCCTTTACAGAAGAACCTAGAGGTCTTTAACAACGTTAAACTAGCCTGTGATAAAACAGCAGAACACATGAAGAGTCAGGTCCAGCACACAGAGAAACAGATTAGGAAAGAGTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATAGCTGcactgagggaggaagaggagcagaaGAGTCAGATGATGAGGAAGAAGATTGAAGAGATGAGCAGAAAGATATCATACCTTTCAGATGCAATcagaaccatagaggaggagctGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAGGACCACAAAGGAAAGATCCCAGTACACACTGTTGGATCCACAGCTGGTCTCAGGAGTTCTGATAGACAAGGCCAAACACCTGGGCAACCTGCAGTTCAGAGTCTGGGAGAAGATACTGGGGATCCTCAAATACACTCCTGTGATTCTGGACCCAAACACTGCacatcccagtctctctctgactgatGATCTGACCAGTGTGAGAAGACCAGGCACGTCCCAGCAGTTCGTTAACAACCCAGAGCGATTCATGAGGTACACAAATGTTCTTGGCTCCGAGGGGTTCAGCTCAGGAATACACAGCTGGGAGCTGGAGGTGGGGGACCATCCTGACTGGGTTTTGGGCGTGGCTAAAGAGTCCATTGACAGGAAGCGGGAGCGTGATGCGACACCAAAGAATGGAATGTGGTGTATATCGCAGCACGGTGGGAAGTACATAGGGGGAGGAGGTGACATCATCGCTCTGAAGAGGAGACCCCAGAGGATCAGAGTGCAGCTGGACTACAACAGAGGGGAGGTGTACTTCTACGACCCCAAATACATGACACCTATCTACACTCTTAAAGTCAGATCTACTGAGAGACTGTTCCCATACTTTAATATTGGGAATGTGGCTAATGGCAACAACCCTGGTATTCAGATCTGCCAATCCAAAGTGTCTCTGAAAGTGAAgtaatccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaacatgTGTCAGTTCAGTGGACATTATCAGGAGGTCATTTTGGGGGTTAAGATAATACACACATAATTTTTACAAACTTCAGGACTGAAATATCCCTACGCTATGTACTTCCCTTTGAATTAAGGATCAATAAGAATACATTGTTTAAGAATCAATTAAAAATACATTCTATAAGAATAAATTAATAATACATTCTATAAGAATCAATTAATAATCAATTGTTTAAGAATCAATTAAGAATCAATTGTTTAAGAATCAATTAATAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTAAAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTATCAAGGGTGAATCATGGTTGTTATTCTTACAAGAGGAGTGTGCTGTATTGGGAAAATCTCCCCATAAGAAAAGTTAGTTGTTTCAAATGCAATGCATTTTGTTATGTGAAAAACTGTATATTTTTTCTGATTAAAAATAAACTTACTGTAAAACTGTCTAATCTCATGTGGTGACTACTTCGTGATCTGAATAAGAGTTCTGTCAGATCAGGCTGACCTTAGCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTAGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTAGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACC

Function

NR:

description
PREDICTED: zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594101.2 True 2775 mRNA 0.41 1 1222130 1224904

Neighbor

gene id symbol gene type direction distance location
LOC118936923 NA coding upstream 252602 968616 ~ 969528 (+)
LOC110506977 LOC106595099 coding upstream 313554 905576 ~ 908576 (+)
cmc1 cc068 coding upstream 349616 860459 ~ 872515 (+)
LOC118937316 LOC106573240 coding upstream 496155 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 499737 714730 ~ 722393 (+)
tgfbr2b LOC106606173 coding downstream 84298 1309202 ~ 1390936 (+)
LOC118937323 NA coding downstream 199412 1424316 ~ 1426453 (+)
stt3b stt3b coding downstream 231432 1456336 ~ 1564305 (+)
LOC118937324 NA coding downstream 345406 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 363278 1585657 ~ 1588650 (+)
G104776 NA non-coding upstream 38412 1182336 ~ 1183718 (+)
G104771 NA non-coding upstream 48071 1173655 ~ 1174059 (+)
G104770 NA non-coding upstream 48602 1172408 ~ 1173528 (+)
G104756 NA non-coding upstream 82156 1139191 ~ 1139974 (+)
G104746 NA non-coding upstream 111057 1110177 ~ 1111073 (+)
G104702 NA non-coding downstream 8621 1233525 ~ 1234133 (+)
G104789 NA non-coding downstream 25317 1250221 ~ 1252467 (+)
G104798 NA non-coding downstream 41552 1266456 ~ 1267051 (+)
G104894 NA non-coding downstream 47193 1272097 ~ 1272610 (+)
G104896 NA non-coding downstream 51128 1276032 ~ 1276273 (+)
G104761 NA other upstream 68381 1153061 ~ 1153749 (+)
G104092 NA other upstream 520859 690046 ~ 701271 (+)
G103851 NA other upstream 1041108 174996 ~ 181022 (+)
G105036 NA other downstream 474169 1699073 ~ 1700431 (+)
G105042 NA other downstream 484065 1708969 ~ 1710557 (+)
G106019 NA other downstream 1295812 2520716 ~ 2527972 (+)
G106122 NA other downstream 1493057 2717961 ~ 2718525 (+)

Expression


Co-expression Network