LOC110515934 (gadl1)


Basic Information

Item Value
gene id LOC110515934
gene name gadl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1427251 ~ 1457133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935016.1
CATTTCAAAACGACACAAACAAAAACGCACTGACGCAGTGAAACCGTGGCCCCGCGGCAACAGTGCAGAGAGAAAATAATTGGTCAACTTGATTCTTCTAGACTCTTGACTGTAATCAGCCAGTGTTCTTCCATGACGCCCAGGCAACCCGCCAGTAACAAGGATGGCCTAACCTTGCCCACGGGGCGCGACGTCACCATGTTAAAGACATTCTTGGTCTATAAAGGAGACATTCTAGTTTATCTCCAAacattatttaaaacattttagctGGAAGAACAGAGCTGTTTGAGACCAATCAATTCAACCATAAATGAACAATGGCGCCGACGAATGAAAGACATATGAACGATACCTCTAGTAAGGCCTCAGCGAGCCCCGCGGAGCCCAAGGGGAAGCGGCCCCCAGTGCTTGTGGACGGGGTGACTCTGAACGGCCCCACGCTGGACATCAGGGAAGCAGAGAGCTTCCTCAGAGACGCCATGCCCATCATCATGGAGGAGGCCGTCTGGAAGGCTACTGACGTCAAGGAGAAGGTGTGTGAGTGGCGCTCTCCGGAGCAGCTGAAGGACCTATTAGACCTAGAGCTGAGGGAAGGAGGCGAGGCACATCCCCAGATACTGCAGCGCTGTCGGGATGCCATCCGATACAGTGTCAAGACCGGACATCCTCTCTTCTTCAACCAGCTCTATGCAGGCATGGACCCTTATTCACTAGTGGGCCGATTCATCACAGAAGCTATCAACCCCAGTCTGTACACGTACGAGGTGGCTCCAGTGTTCCTGCTGACAGAGGAGGCGGTTCTGCAGAAGATGATTGAGATCATTGGATGGCAGGAGGGAGGGGACGGCATCTTCAGCCCAGGTGGCTCTGTGTCCAACATGTATGCTGTGAACGTGGCCAGGTACCACCACTGTCCTGATGTGAAGGTGCTGGGCCTGTCTGCCTTGCCTAGACTGGTCATGTTTACATCTCAGgagTGTCATTACTCGGTTGCCAAAGCAGCGGCTTTCCTAGGAATTGGCACCAACAATGTTTATGTGATCCCGTCAGATAAGAGAGGGAAGATGATTCCTGCGGAGTTTGAGAAGCAAGTACAGAGAGCCAAAGATGAGggagCGTTGCCCTTCATGGTGAACGCCACAGCAGGGACCACCGTTCTAGGGGCCTTCGACCCGCTGGAGGAGATAGCTGACATCTGTGAACGACACAATCTATGGATGCATGTAGATGCATGTTGGGGAGGAGGAGCCCTGATGTCTAAGAAACACAGATACCTGCTGCAGGGCATTCACAGAGCCAACTCAGTAGCATGGAATCCTCACAAGATGCTGATGGCTGGTCTACAGTGCTGTGCATTCATGGTTCGGGACAAAACGAATCTTCTCCAGCGGTGTCACTCGGCCCAGGCCTCCTACCTCTTCCAGCAGGATAAGTTCTATGACGTCAGCTATGACACGGGAGACAAGTCCATTCAGTGCAGCCGCAAGCCCGACGCCTTCAAGTTCTGGCTGATGTGGAAAGCCATCGGCACCAAGGGTCTGGAAGAGAGAGTGGACAGAGCCCTCGCTATGGCCAGATATCTGGCAGAGGAGATCAAGAAGAGAGATGGATTCCGTCTTGTGATGGAGCCGGAGTACACCAACGTCTGTTTCTGGTACATTCCTCCCAGTCTGAGGGACATGGCTGACGGACCCGAGTTCTGGAGAAATGTCCATGCGGTGGCGCCAGTGGTTAAGGAGCGCATGATGAAGAAGGGCTCTATGATGGTAGGCTACCAGCCCCATGGAGACAAGGCTAACTTCTTCAGACAGATCATCATTAGCCCTCAGGTCAGCAGAGAAGACATGGACTTTCTGCTGGACCAAATACACAGCCTGGGGATGGACTTATGATCCCACGGGGGAATACctacaaaatggcaccctaattccctcaatgagtcctggtcaaaagtagtgcaatatatacaGGGAATTTGGGTACCATTTTGAACAAAACCCAAATGGCCATGTTCAGTAGGCAAGAAACAGGAGATCCTGTTTTGAAACTGAGTGAAACGGAAGAGGTGGTACCCCAAACATCCTATAAGACGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATA

Function

symbol description
gadl1 Predicted to enable aspartate 1-decarboxylase activity; pyridoxal phosphate binding activity; and sulfinoalanine decarboxylase activity. Predicted to be involved in carboxylic acid metabolic process. Predicted to be located in cytosol.

NR:

description
acidic amino acid decarboxylase GADL1-like isoform X1

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935016.1 True 2492 mRNA 0.49 14 1427251 1457133

Neighbor

gene id symbol gene type direction distance location
LOC118937319 NA coding downstream 111006 1314565 ~ 1316245 (-)
azi2 azi2 coding downstream 521833 879818 ~ 905418 (-)
eomesb eomesb coding downstream 614061 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 636380 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 750739 672497 ~ 676512 (-)
LOC110515405 LOC106590999 coding upstream 116269 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 245818 1702951 ~ 1704863 (-)
zdhhc3a zdhhc3 coding upstream 252383 1709516 ~ 1732333 (-)
nrsn1 nrsn1 coding upstream 463877 1921010 ~ 1925939 (-)
LOC118937333 NA coding upstream 845503 2302636 ~ 2303881 (-)
G105244 NA non-coding downstream 24611 1398473 ~ 1402640 (-)
G105205 NA non-coding downstream 36322 1377083 ~ 1390929 (-)
G105230 NA non-coding downstream 50810 1363753 ~ 1376441 (-)
G105231 NA non-coding downstream 55577 1369961 ~ 1371674 (-)
G105271 NA non-coding upstream 15728 1472861 ~ 1474067 (-)
G105294 NA non-coding upstream 30164 1487297 ~ 1490169 (-)
G105299 NA non-coding upstream 45182 1502315 ~ 1502980 (-)
G105301 NA non-coding upstream 47935 1505068 ~ 1505682 (-)
G105283 NA non-coding upstream 48676 1505809 ~ 1508116 (-)
G105220 NA other downstream 84916 1333986 ~ 1342335 (-)
G105285 NA other upstream 83597 1540730 ~ 1541706 (-)
G105340 NA other upstream 184134 1641267 ~ 1641732 (-)
G105427 NA other upstream 455459 1912592 ~ 1917188 (-)
G105428 NA other upstream 460218 1917351 ~ 1918027 (-)

Expression


Co-expression Network