stt3b (stt3b)


Basic Information

Item Value
gene id stt3b
gene name stt3b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1456336 ~ 1564305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935010.1
AcgtgttttttttaaaaacaattaaGTGTTAATTGTATCTACTTATTACGCAAAGGTGTACTCTATTCAATACCTCCGCAGAGAGACACCTTGCCAGGGCGACTTTCCCCACTGCCCATCTTCGGGAGAACTGTGCGCGGAGCAGCGAGTGAACAGGTTCAACTACAGATCTACTCACCATCTGACCATCAACGGCTTCTACGACTTCCTCAACTGGTTCGATGACAGGGCCTGGTACCCACTGGGAAGGATAGTGGGTGGCACGgtttaccCAGGTCTGATGGTAACAGCTGGTCTCATCCACTATGTTCTAAACCTGCTCCACATCACGGTGCACatcagagacgtgtgtgtgttccTGGCGCCCGTCTTCAGCGGCCTCACGTCCATCTCCACCTTCCTGCTGACCCGCGAGCTCTGGAACCAGGGGGCGGGGCTTCTGGCGGCGTGCTTCATCGCTATTGTCCCTGGTTACATCTCCCGCTCCGTGGCGGGCTCCTTCGACAATGAGGGCATCGCCATCTTTGCCCTCCAGTTTACCTACTATCTATGGGTGAAATCAGTGAAGACTGGGTCAGTGTTCTGGGCCATAGGCTGCTGCCTCTCATACTTCTACATGgtgtcTGCATGGGGAGGCTACGTCTTCATCATCAACCTGATCCCTCTCCATGTGTTTGTCCTGCTGCTAATGCAGCGATACAGCAGACGAGTCTACATCGCTTACAGTACGTTCTACATCGTTGGTCTGGTGCTCTCCATGCAGATCCCCTTTGTGGGGTTCCAGCCAATCAGGACCAGCGAACACATGGCTGCAGCAGgTGTGTTTGCGTTGCTCCAGGCCTATGCATTCCTCCAGTACCTGAAAGACAGACTGACCAGACAGGAGTTCCAGACCCTGTTCTTCCTGGGGGTCTCTCTGGCTGCTGGGGCAGTCTTCCTCACTGTTATATACCTGACttatacagGACACATCGCTCCTTGGAGTGGTCGATTCTATTCACTGTGGGATACAGGgtaTGCTAAGATCCACATCCCCATCATAGCGTCTGTGTCGGAGCACCAGCCCACCACATGGGTCTCGTTCTTCTTCGACCTCCACATCCTGGTCTGTACCTTTCCTGCTGGACTCTGGTTCTGCATCAAGAACATCAACGACGAGAGAGTCTtcgtGGCGCTGTATGCCATCAGTGCTGTCTACTTTGCTGGAGTGATGGTCCGTCTGATGCTGACCCTGACCCCTGTAGTGTGTATGCTGTCAGCTATAGCCTTCTCCAGCGTGTTTGAACACTACTTAGGGGACGACATGAAGAGGGAGAGCCCTCCCATAGAGGACAGTAGTGATGAGGACGACAAGAGGAACTCTGGAAACCTCTATGATAAGGCAGGGAAGGTCCGTAAGCACGTCTCAGAGCAGGAGAAGACAGAGGAAGGTCTGGGGCCCAACATTAAGAGTATCGTCACCATGTTGATGTTGATGCTGCTCATGATGTTCGCTGTCCACTGCACCTGGGTTACTAGTAACGCCTACTCCAGCCCTAGTGTTGTACTGGCCTCTTATAACAACGATGGGTCGAGGAATATTCTAGATGATTTCCGCGAGGCCTACTATTGGCTAAGGCAGAACACAGAGGAGCAGGCCAGAGTGATGTCGTGGTGGGACTATGGCTATCAGATAGCAGGGATGGCCAATCGGACCACGCTAGTGGACAACAACACCTGGAACAACAGTCATATAGCACTGgTGGGGAAGGCCATGTCGTCCAATGAGAGTGCAGCGTATGAGATCATGAGGTCTTTGGACGTGGACTATGTGCTTATTATCTTCGGTGGCGTGATTGGCTACTCTGGTGATGACATCAACAAGTTCCTGTGGATGGTGCGGATCGCAGAGGGAGAGCATCCTAAAGAGATCAGGGAGAGTGACTACTTCACCCCCCAGGGAGAGTTTAGGGTGGACAAAGCGGGGTCTCCCATCCTGCTCAACTGTCTGATGTATAAGATGTCGTACTACCGCTTTGGAGAGATGCAGCTGGACTTCCGGACGCCGCCGGGTTTCGACCGGACCCGTAACACTGAGATCGGTAACAAGGACATCAAGCTGAAACACCTGGAGGAGGCGTTCACCTCAGAACACTGGCTGGTCCGGATCTACAAGGTCAAGAAGGAGGAGAACAGGGACCCCCTGGTGCACAGCCcccgcagcagcagcagcagacaaAAGTACACCTCTAAAAAGACGGCGAAGAGGAAGCGTGGTCATGTGAAGAACAAACTTGCCCTCAAGAAAGGCAAGAAACTGAACAACAAGAAATCAGTTTAGCCATAAAAACGACCACAAAGGcgctacgagagagagagagtgag
>XM_036935000.1
TGAGCTCTCTTCCTGGTCCTGCTGTCCACGGTGCGCCCGCCCTGACATCAACTTCCAAGGAGGAGCAGCTCGTCGGTTCGCGTGCGCTACTGCGGTACTGCAACCCCGGCTGCTATGTGACTCCATCGGGGGAACTTGTTTTGAATTAGCGGTCCGGTTATACCCAGGATAGGGTTCTGGTGATTGGAAGTGAAACGAGAGGTGCAGATAGGGTGTGAGGGTCTTCGACAGTGGAGCGTGGCAGCAGGAGGGGGATTTCTCTCGTTCCTATCAGATCTGCCTACAACCGGGGTCTGGCGTAGAATATGGCGGAACATCACTCTGTTTCCGATAGCAAGCATAAAGCTTCTGCTGTGAATATCGGAGCTTCTCTCTCTGGGAATGGACGGAGCAGTCCAGCGGGGACCGTCGGTAGTAGTCCTACGGGGGCTCTCTCCACCGGGATAGCTCAGCCGGCAGGGTGGCAGTCCTTACTTTCGTTTACCATCCTGTTTCTGGCCTGGCTTGCTGGTTTCAGTGCCAGGCTCTTCGCTGTCATCCGATTTGAGAGCATCATCCACGAGTTTGACCCTTGGTTCAACTACAGATCTACTCACCATCTGACCATCAACGGCTTCTACGACTTCCTCAACTGGTTCGATGACAGGGCCTGGTACCCACTGGGAAGGATAGTGGGTGGCACGgtttaccCAGGTCTGATGGTAACAGCTGGTCTCATCCACTATGTTCTAAACCTGCTCCACATCACGGTGCACatcagagacgtgtgtgtgttccTGGCGCCCGTCTTCAGCGGCCTCACGTCCATCTCCACCTTCCTGCTGACCCGCGAGCTCTGGAACCAGGGGGCGGGGCTTCTGGCGGCGTGCTTCATCGCTATTGTCCCTGGTTACATCTCCCGCTCCGTGGCGGGCTCCTTCGACAATGAGGGCATCGCCATCTTTGCCCTCCAGTTTACCTACTATCTATGGGTGAAATCAGTGAAGACTGGGTCAGTGTTCTGGGCCATAGGCTGCTGCCTCTCATACTTCTACATGgtgtcTGCATGGGGAGGCTACGTCTTCATCATCAACCTGATCCCTCTCCATGTGTTTGTCCTGCTGCTAATGCAGCGATACAGCAGACGAGTCTACATCGCTTACAGTACGTTCTACATCGTTGGTCTGGTGCTCTCCATGCAGATCCCCTTTGTGGGGTTCCAGCCAATCAGGACCAGCGAACACATGGCTGCAGCAGgTGTGTTTGCGTTGCTCCAGGCCTATGCATTCCTCCAGTACCTGAAAGACAGACTGACCAGACAGGAGTTCCAGACCCTGTTCTTCCTGGGGGTCTCTCTGGCTGCTGGGGCAGTCTTCCTCACTGTTATATACCTGACttatacagGACACATCGCTCCTTGGAGTGGTCGATTCTATTCACTGTGGGATACAGGgtaTGCTAAGATCCACATCCCCATCATAGCGTCTGTGTCGGAGCACCAGCCCACCACATGGGTCTCGTTCTTCTTCGACCTCCACATCCTGGTCTGTACCTTTCCTGCTGGACTCTGGTTCTGCATCAAGAACATCAACGACGAGAGAGTCTtcgtGGCGCTGTATGCCATCAGTGCTGTCTACTTTGCTGGAGTGATGGTCCGTCTGATGCTGACCCTGACCCCTGTAGTGTGTATGCTGTCAGCTATAGCCTTCTCCAGCGTGTTTGAACACTACTTAGGGGACGACATGAAGAGGGAGAGCCCTCCCATAGAGGACAGTAGTGATGAGGACGACAAGAGGAACTCTGGAAACCTCTATGATAAGGCAGGGAAGGTCCGTAAGCACGTCTCAGAGCAGGAGAAGACAGAGGAAGGTCTGGGGCCCAACATTAAGAGTATCGTCACCATGTTGATGTTGATGCTGCTCATGATGTTCGCTGTCCACTGCACCTGGGTTACTAGTAACGCCTACTCCAGCCCTAGTGTTGTACTGGCCTCTTATAACAACGATGGGTCGAGGAATATTCTAGATGATTTCCGCGAGGCCTACTATTGGCTAAGGCAGAACACAGAGGAGCAGGCCAGAGTGATGTCGTGGTGGGACTATGGCTATCAGATAGCAGGGATGGCCAATCGGACCACGCTAGTGGACAACAACACCTGGAACAACAGTCATATAGCACTGgTGGGGAAGGCCATGTCGTCCAATGAGAGTGCAGCGTATGAGATCATGAGGTCTTTGGACGTGGACTATGTGCTTATTATCTTCGGTGGCGTGATTGGCTACTCTGGTGATGACATCAACAAGTTCCTGTGGATGGTGCGGATCGCAGAGGGAGAGCATCCTAAAGAGATCAGGGAGAGTGACTACTTCACCCCCCAGGGAGAGTTTAGGGTGGACAAAGCGGGGTCTCCCATCCTGCTCAACTGTCTGATGTATAAGATGTCGTACTACCGCTTTGGAGAGATGCAGCTGGACTTCCGGACGCCGCCGGGTTTCGACCGGACCCGTAACACTGAGATCGGTAACAAGGACATCAAGCTGAAACACCTGGAGGAGGCGTTCACCTCAGAACACTGGCTGGTCCGGATCTACAAGGTCAAGAAGGAGGAGAACAGGGACCCCCTGGTGCACAGCCcccgcagcagcagcagcagacaaAAGTACACCTCTAAAAAGACGGCGAAGAGGAAGCGTGGTCATGTGAAGAACAAACTTGCCCTCAAGAAAGGCAAGAAACTGAACAACAAGAAATCAGTTTAGCCATAAAAACGACCACAAAGGcgctacgagagagagagagtgag

Function

symbol description
stt3b Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity and metal ion binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Orthologous to human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B).

NR:

description
PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935010.1 False 2364 mRNA 0.52 16 1456336 1564305
XM_036935000.1 True 2782 mRNA 0.54 16 1474555 1564305

Neighbor

gene id symbol gene type direction distance location
LOC118937323 NA coding upstream 30059 1424316 ~ 1426453 (+)
tgfbr2b LOC106606173 coding upstream 65400 1309202 ~ 1390936 (+)
rbms3 rbms3 coding upstream 224801 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding upstream 231432 1222130 ~ 1224904 (+)
LOC118936923 NA coding upstream 486808 968616 ~ 969528 (+)
LOC118937324 NA coding downstream 6005 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 23877 1585657 ~ 1588650 (+)
LOC118937328 NA coding downstream 24515 1588820 ~ 1589368 (+)
LOC118937325 NA coding downstream 40835 1605140 ~ 1606773 (+)
gpd1l LOC105023484 coding downstream 119256 1683561 ~ 1698369 (+)
G104963 NA non-coding upstream 3503 1452188 ~ 1452833 (+)
G104959 NA non-coding upstream 6896 1448721 ~ 1449440 (+)
G104955 NA non-coding upstream 11173 1444535 ~ 1445163 (+)
G104948 NA non-coding upstream 47562 1407391 ~ 1408774 (+)
G105014 NA non-coding downstream 25290 1589595 ~ 1591453 (+)
G105019 NA non-coding downstream 33281 1597586 ~ 1597987 (+)
G105020 NA non-coding downstream 33880 1598185 ~ 1599541 (+)
G105049 NA non-coding downstream 69432 1633737 ~ 1634417 (+)
G104761 NA other upstream 302587 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 583821 860459 ~ 872515 (+)
G104092 NA other upstream 755065 690046 ~ 701271 (+)
G103851 NA other upstream 1275314 174996 ~ 181022 (+)
G105036 NA other downstream 134768 1699073 ~ 1700431 (+)
G105042 NA other downstream 144664 1708969 ~ 1710557 (+)
G106019 NA other downstream 956411 2520716 ~ 2527972 (+)
G106122 NA other downstream 1153656 2717961 ~ 2718525 (+)
G106240 NA other downstream 1410518 2974823 ~ 3039475 (+)

Expression


Co-expression Network