LOC118937324


Basic Information

Item Value
gene id LOC118937324
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1570310 ~ 1573421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935034.1
TCTCTTCAAGGTTTGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATTTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCTGCCATAAATTAGACTCTATAAAGATTTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAATATCTCTTCAAGGTTCGGCCATATAAAGATTTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTTGGTCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCATGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAAGGACAAACAGACTGGAGCACCGGGCTACTTCCTGGTTCCAATCATTCCAACGTTAGTGTGTGAATACTGAAGATTGCTGGTGTGGGTTGAAGAAATGGCTTTGACTTTGACATTGTAGCAGTGTTCACCTCTGAAGGGGCTGGAGGAAACGCTGTTCTCTATACTGGGCCATTGTGTTATGAACAGTGTCCAAGTCAAGTGTGACAAACATACATAACcggtatgtatatactgtacatcatagAACAGAAGGGCTGAAGGAAGACTCTTCACTAAACAGTGTGTTTGGTGTTGAGTGTTAATTATGGACAAATCATTAGATCCTTGGATCTTACATACATCATACAGCTGGAAGGAAATTCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAAGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAATCACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGgtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGCTAATAACAGTGGAGACAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTACAGTACCTGTACAAACCAATTAAAAGTGAAGGAAGAAGCATGTGAATATAACATATTCTTCTGGTATTTAGATTCTACTGTCTATAAAAAAAAAGCTACATAATTGTTCAGCTATCTTTGACCACCAACGATCACGCTCATCTTCCGTCCCTAACCAACATCTTCCTGGTTCGACCCGGTCCGTCTCCAAAATGGCCGCCGAGTTTCCTGTATCGTGTGGTAGCAGGTCAGCTTCTGACAGGACACTCAGTGAGCTTTTTTGCTGTCTTGACTGTAGTTCCTGTCCCTCTGAGAGTCTTTGGCACCTCTCATTCTTATTGAATGACTGAGACACAAGCTCCTCATTCAAGACAATCCGTTGGGCAAATCTGAaattagcaccctattccctatgtagtgcactcttTCTGCAGTTGTccgctatatagagaatagggttccatttggaacacaggccCCTTGTGTATTTCCTCTGTTCTCTAGCGGCCCGGCTAGCTGGTCCCCTGTGTGTTGCCATGAC
>XM_036935045.1
CCATAAATTAGACTCTATAAATATCTCTTCAAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATTTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTTGGTCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCATGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAAGGACAAACAGACTGGAGCACCGGGCTACTTCCTGGTTCCAATCATTCCAACGTTAGTGTGTGAATACTGAAGATTGCTGGTGTGGGTTGAAGAAATGGCTTTGACTTTGACATTGTAGCAGTGTTCACCTCTGAAGGGGCTGGAGGAAACGCTGTTCTCTATACTGGGCCATTGTGTTATGAACAGTGTCCAAGTCAAGTGTGACAAACATACATAACcggtatgtatatactgtacatcatagAACAGAAGGGCTGAAGGAAGACTCTTCACTAAACAGTGTGTTTGGTGTTGAGTGTTAATTATGGACAAATCATTAGATCCTTGGATCTTACATACATCATACAGCTGGAAGGAAATTCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAAGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAATCACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGgtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGCTAATAACAGTGGAGACAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTACAGTACCTGTACAAACCAATTAAAAGTGAAGGAAGAAGCATGTGAATATAACATATTCTTCTGGTATTTAGATTCTACTGTCTATAAAAAAAAAGCTACATAATTGTTCAGCTATCTTTGACCACCAACGATCACGCTCATCTTCCGTCCCTAACCAACATCTTCCTGGTTCGACCCGGTCCGTCTCCAAAATGGCCGCCGAGTTTCCTGTATCGTGTGGTAGCAGGTCAGCTTCTGACAGGACACTCAGTGAGCTTTTTTGCTGTCTTGACTGTAGTTCCTGTCCCTCTGAGAGTCTTTGGCACCTCTCATTCTTATTGAATGACTGAGACACAAGCTCCTCATTCAAGACAATCCGTTGGGCAAATCTGAaattagcaccctattccctatgtagtgcactcttTCTGCAGTTGTccgctatatagagaatagggttccatttggaacacaggccCCTTGTGTATTTCCTCTGTTCTCTAGCGGCCCGGCTAGCTGGTCCCCTGTGTGTTGCCATGAC
>XM_036935038.1
AAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATTTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTTGGCCATATAAAGATCTCTTCAAGGTTTGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAAGGACAAACAGACTGGAGCACCGGGCTACTTCCTGGTTCCAATCATTCCAACGTTAGTGTGTGAATACTGAAGATTGCTGGTGTGGGTTGAAGAAATGGCTTTGACTTTGACATTGTAGCAGTGTTCACCTCTGAAGGGGCTGGAGGAAACGCTGTTCTCTATACTGGGCCATTGTGTTATGAACAGTGTCCAAGTCAAGTGTGACAAACATACATAACcggtatgtatatactgtacatcatagAACAGAAGGGCTGAAGGAAGACTCTTCACTAAACAGTGTGTTTGGTGTTGAGTGTTAATTATGGACAAATCATTAGATCCTTGGATCTTACATACATCATACAGCTGGAAGGAAATTCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAAGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAATCACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGgtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGCTAATAACAGTGGAGACAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTACAGTACCTGTACAAACCAATTAAAAGTGAAGGAAGAAGCATGTGAATATAACATATTCTTCTGGTATTTAGATTCTACTGTCTATAAAAAAAAAGCTACATAATTGTTCAGCTATCTTTGACCACCAACGATCACGCTCATCTTCCGTCCCTAACCAACATCTTCCTGGTTCGACCCGGTCCGTCTCCAAAATGGCCGCCGAGTTTCCTGTATCGTGTGGTAGCAGGTCAGCTTCTGACAGGACACTCAGTGAGCTTTTTTGCTGTCTTGACTGTAGTTCCTGTCCCTCTGAGAGTCTTTGGCACCTCTCATTCTTATTGAATGACTGAGACACAAGCTCCTCATTCAAGACAATCCGTTGGGCAAATCTGAaattagcaccctattccctatgtagtgcactcttTCTGCAGTTGTccgctatatagagaatagggttccatttggaacacaggccCCTTGTGTATTTCCTCTGTTCTCTAGCGGCCCGGCTAGCTGGTCCCCTGTGTGTTGCCATGAC
>XM_036935050.1
AAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTTGGCCATATAAAGATCTCTTCAAGGTTTGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAAGGACAAACAGACTGGAGCACCGGGCTACTTCCTGGTTCCAATCATTCCAACGTTAGTGTGTGAATACTGAAGATTGCTGGTGTGGGTTGAAGAAATGGCTTTGACTTTGACATTGTAGCAGTGTTCACCTCTGAAGGGGCTGGAGGAAACGCTGTTCTCTATACTGGGCCATTGTGTTATGAACAGTGTCCAAGTCAAGTGTGACAAACATACATAACcggtatgtatatactgtacatcatagAACAGAAGGGCTGAAGGAAGACTCTTCACTAAACAGTGTGTTTGGTGTTGAGTGTTAATTATGGACAAATCATTAGATCCTTGGATCTTACATACATCATACAGCTGGAAGGAAATTCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAAGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAATCACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGgtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGCTAATAACAGTGGAGACAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTACAGTACCTGTACAAACCAATTAAAAGTGAAGGAAGAAGCATGTGAATATAACATATTCTTCTGGTATTTAGATTCTACTGTCTATAAAAAAAAAGCTACATAATTGTTCAGCTATCTTTGACCACCAACGATCACGCTCATCTTCCGTCCCTAACCAACATCTTCCTGGTTCGACCCGGTCCGTCTCCAAAATGGCCGCCGAGTTTCCTGTATCGTGTGGTAGCAGGTCAGCTTCTGACAGGACACTCAGTGAGCTTTTTTGCTGTCTTGACTGTAGTTCCTGTCCCTCTGAGAGTCTTTGGCACCTCTCATTCTTATTGAATGACTGAGACACAAGCTCCTCATTCAAGACAATCCGTTGGGCAAATCTGAaattagcaccctattccctatgtagtgcactcttTCTGCAGTTGTccgctatatagagaatagggttccatttggaacacaggccCCTTGTGTATTTCCTCTGTTCTCTAGCGGCCCGGCTAGCTGGTCCCCTGTGTGTTGCCATGAC

Function

NR:

description
uncharacterized protein LOC101885377

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935034.1 False 2607 mRNA 0.47 4 1570310 1573421
XM_036935045.1 False 2483 mRNA 0.48 4 1570551 1573421
XM_036935038.1 False 2450 mRNA 0.48 3 1570581 1573421
XM_036935050.1 True 2423 mRNA 0.48 3 1570581 1573421

Neighbor

gene id symbol gene type direction distance location
stt3b stt3b coding upstream 6005 1456336 ~ 1564305 (+)
LOC118937323 NA coding upstream 144033 1424316 ~ 1426453 (+)
tgfbr2b LOC106606173 coding upstream 179374 1309202 ~ 1390936 (+)
rbms3 rbms3 coding upstream 338775 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding upstream 345406 1222130 ~ 1224904 (+)
LOC118937327 NA coding downstream 14761 1585657 ~ 1588650 (+)
LOC118937328 NA coding downstream 15399 1588820 ~ 1589368 (+)
LOC118937325 NA coding downstream 31719 1605140 ~ 1606773 (+)
gpd1l LOC105023484 coding downstream 110140 1683561 ~ 1698369 (+)
tmem42a LOC106595323 coding downstream 131468 1704889 ~ 1707675 (+)
G105001 NA non-coding upstream 30100 1538977 ~ 1540210 (+)
G104999 NA non-coding upstream 55269 1514533 ~ 1515041 (+)
G104997 NA non-coding upstream 56065 1512292 ~ 1514245 (+)
G104992 NA non-coding upstream 77287 1492302 ~ 1493023 (+)
G104989 NA non-coding upstream 85691 1483937 ~ 1484619 (+)
G105014 NA non-coding downstream 16174 1589595 ~ 1591453 (+)
G105019 NA non-coding downstream 24165 1597586 ~ 1597987 (+)
G105020 NA non-coding downstream 24764 1598185 ~ 1599541 (+)
G105049 NA non-coding downstream 60316 1633737 ~ 1634417 (+)
G104761 NA other upstream 416561 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 697795 860459 ~ 872515 (+)
G104092 NA other upstream 869039 690046 ~ 701271 (+)
G103851 NA other upstream 1389288 174996 ~ 181022 (+)
G105036 NA other downstream 125652 1699073 ~ 1700431 (+)
G105042 NA other downstream 135548 1708969 ~ 1710557 (+)
G106019 NA other downstream 947295 2520716 ~ 2527972 (+)
G106122 NA other downstream 1144540 2717961 ~ 2718525 (+)
G106240 NA other downstream 1401402 2974823 ~ 3039475 (+)

Expression


Co-expression Network