LOC110514512 (LOC105016610)


Basic Information

Item Value
gene id LOC110514512
gene name LOC105016610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1745298 ~ 1794938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935139.1
ATCAGTACTGCGTACGAGGGAAGCTATCGCCCGACTTCAAATACATGATCCTTGGTTAATCCTCCAGCCTCTTGGGAACGGAGATAATAACCCGTGTCGGAATTAGCTGGACACAAACACGGAAACAAAACAACGTTTAACATCAAACAAATTCGCTACTGTCGCTTTTCCTGATTTTCCTCTCTCCGGGTTCGTTGAGGATGAGGTTCCCGACCATCAGACGGTGTCCTGGGGAAGGAGATGGGAAGAAGGAACTGGCGCCTCCATGTAGGAACCCCTTTGTGCATGACTTGAGATTCACCCCGCTGGAAAAAGCAAAGATAGCGTTGATGACGGTGACTCTGTTCCCCATCCGGTTGTTCCTGGCAGCCTTCATGATGCTGCTGGCCTGGCCCTTCGCCTTCATCGCCTCTGTGGGACGCAACGAGATGGTGGTGGAACCCCAGTCTCTATGGAGGAAgtttgtGGACGTGGCTCTGAGGACCATCATGCGGGTCATGTGGTTTGCAGGAGGCTTCCATTGGATGACGGTGAAGGGGCGCCAGGCGCTACCGGCCGAGGCCCCTATCCTAACGCTGGGACCCCACTCCTCCTACTTCGATGCTATCCCCGTCACCATGTCCATGTCCTCCATCGTCATGAAGGCAGAGAGCAAGGACATTCCTGTCTGGGGCAccCTGATCAAGTACATCAGACCAGTGTTTGTCTCCAGGTCAGACCAGGACTCCCGTAAGAAGACTGTTGAGGAGATCAAACGCAGAGCCCAGTCTGGAGGAGAATGGCCTCAGatAATGATTTTCCCAGAGGGAACGTGTACCAACAGGTCGTGTCTCATCACGTACAAACCAGGAGCGTTCATCCCAGCGGTGCCAGTTCAGCCTGTGGTGATAAAATACCCCAATAAAATGGACACAATCACCTGGACGTGGCAGGGGCCTGGAGCGTTTAAGATCCTGTGGCTCACACTGTGCCAGCTGCACAATGAGTTCATCATTGAGtTCCTTCCTGTCTACACTCCATCAGAAGAGGAGAAGAACAACCCAGCACTGTTTGCTCACAACGTCAGGCGCCTGATGGCCAAGGCCCTGGACATCCCCATTACTGACTACTCGTTTGAAGACTGTCAACTGGCCATGGCTGAGGGTCAACTCAGACTCCCTGTTGACACCTGCCTGCTGGAGTTCGCCAAGCTGGTCCGGAGACTGGGGTTGAAGCCCCAGAACGTGGAGAAGGTACTGCAGGAGTTTGGGAACAGAGccaggaagatggagggagagaagctgGGTCTGGAAGCCTTTGCCCACTACCTTGATGTCCCTGTGTCAGACATGCTCAGAGACATCTTCTCCCTCTTCAACGAGcagGAAGACAACGTGATAGACATCAGAGAATATGTCATTGCCTTATCGGTTGTATGCAGACCTGCTAAAACTCTGGAGACCATGAAACTGGCCTTCAGGATGTTTGAGGCGGAGGAGGACGGTGCGATCACAGTGGCTGAGTTGGCCTGCATCCTAAAGACGGCGTTGGGAGTGGCTGACCTCGACGTCTCACGTCTCTTCGCTGCTATCGACACAGAGGACACAGGGAAACTCACCTTCGGCAAGTTCAGGAGCTTTGCAGAGCATCACCCAAACTTCAGTGAGGACTACCTGTCCACAGACAATACAGGCCGTAACGGCTGTCCTCACCAGCCCAACGCCACGCCCAACGCCACGCCCAACGCCAAGCCTCAGACCAACGGCTTCTGCCCGGACTTCAGCCCGCGAGACAACCACCACGACACAACGGCGGCGTGCGGTTCAGTGAAGAAACACAACTGAGTCTGTTAGTCACCTCAGAATCCACCTCTCCTGGTGAGAGAGTGGGTGGTGGGggttgttgttgtcgttgttgATGGGCTATATGtatggtcagtcagtcagacacacaca
>XM_036935148.1
ATCAGTACTGCGTACGAGGGAAGCTATCGCCCGACTTCAAATACATGATCCTTGGTTAATCCTCCAGCCTCTTGGGAACGGAGATAATAACCCGTGTCGGAATTAGCTGGACACAAACACGGAAACAAAACAACGTTTAACATCAAACAAATTCGCTACTGTCGCTTTTCCTGATTTTCCTCTCTCCGGGTTCGTTGAGGATGAGGTTCCCGACCATCAGACGGTGTCCTGGGGAAGGAGATGGGAAGAAGGAACTGGCGCCTCCATGTAGGAACCCCTTTGTGCATGACTTGAGATTCACCCCGCTGGAAAAAGCAAAGATAGCGTTGATGACGGTGACTCTGTTCCCCATCCGGTTGTTCCTGGCAGCCTTCATGATGCTGCTGGCCTGGCCCTTCGCCTTCATCGCCTCTGTGGGACGCAACGAGATGGTGGTGGAACCCCAGTCTCTATGGAGGAAgtttgtGGACGTGGCTCTGAGGACCATCATGCGGGTCATGTGGTTTGCAGGAGGCTTCCATTGGATGACGGTGAAGGGGCGCCAGGCGCTACCGGCCGAGGCCCCTATCCTAACGCTGGGACCCCACTCCTCCTACTTCGATGCTATCCCCGTCACCATGTCCATGTCCTCCATCGTCATGAAGGCAGAGAGCAAGGACATTCCTGTCTGGGGCAccCTGATCAAGTACATCAGACCAGTGTTTGTCTCCAGGTCAGACCAGGACTCCCGTAAGAAGACTGTTGAGGAGATCAAACGCAGAGCCCAGTCTGGAGGAGAATGGCCTCAGatAATGATTTTCCCAGAGGGAACGTGTACCAACAGGTCGTGTCTCATCACGTACAAACCAGGAGCGTTCATCCCAGCGGTGCCAGTTCAGCCTGTGGTGATAAAATACCCCAATAAAATGGACACAATCACCTGGACGTGGCAGGGGCCTGGAGCGTTTAAGATCCTGTGGCTCACACTGTGCCAGCTGCACAATGAGTTCATCATTGAGtTCCTTCCTGTCTACACTCCATCAGAAGAGGAGAAGAACAACCCAGCACTGTTTGCTCACAACGTCAGGCGCCTGATGGCCAAGGCCCTGGACATCCCCATTACTGACTACTCGTTTGAAGACTGTCAACTGGCCATGGCTGAGGGTCAACTCAGACTCCCTGTTGACACCTGCCTGCTGGAGTTCGCCAAGCTGGTCCGGAGACTGGGGTTGAAGCCCCAGAACGTGGAGAAGGTACTGCAGGAGTTTGGGAACAGAGccaggaagatggagggagagaagctgGGTCTGGAAGCCTTTGCCCACTACCTTGATGTCCCTGTGTCAGACATGCTCAGAGACATCTTCTCCCTCTTCAACGAGGAAGACAACGTGATAGACATCAGAGAATATGTCATTGCCTTATCGGTTGTATGCAGACCTGCTAAAACTCTGGAGACCATGAAACTGGCCTTCAGGATGTTTGAGGCGGAGGAGGACGGTGCGATCACAGTGGCTGAGTTGGCCTGCATCCTAAAGACGGCGTTGGGAGTGGCTGACCTCGACGTCTCACGTCTCTTCGCTGCTATCGACACAGAGGACACAGGGAAACTCACCTTCGGCAAGTTCAGGAGCTTTGCAGAGCATCACCCAAACTTCAGTGAGGACTACCTGTCCACAGACAATACAGGCCGTAACGGCTGTCCTCACCAGCCCAACGCCACGCCCAACGCCACGCCCAACGCCAAGCCTCAGACCAACGGCTTCTGCCCGGACTTCAGCCCGCGAGACAACCACCACGACACAACGGCGGCGTGCGGTTCAGTGAAGAAACACAACTGAGTCTGTTAGTCACCTCAGAATCCACCTCTCCTGGTGAGAGAGTGGGTGGTGGGggttgttgttgtcgttgttgATGGGCTATATGtatggtcagtcagtcagacacacaca

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: lysophosphatidylcholine acyltransferase 1

GO: NA

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935139.1 False 1934 mRNA 0.54 14 1745298 1794938
XM_036935148.1 True 1931 mRNA 0.54 14 1745298 1794938

Neighbor

gene id symbol gene type direction distance location
tmem42a LOC106595323 coding upstream 37623 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 46929 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 138525 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 155930 1588820 ~ 1589368 (+)
LOC118937327 NA coding upstream 156648 1585657 ~ 1588650 (+)
slc6a3 slc6a3 coding downstream 21870 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 70427 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 321615 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 371183 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 623248 2418186 ~ 2420621 (+)
G105091 NA non-coding upstream 22607 1721995 ~ 1722691 (+)
G105030 k1143 non-coding upstream 40452 1702955 ~ 1704846 (+)
G105083 NA non-coding upstream 48873 1695943 ~ 1696425 (+)
G105078 NA non-coding upstream 65811 1679058 ~ 1679487 (+)
G105074 NA non-coding upstream 71505 1673026 ~ 1673793 (+)
G105043 NA non-coding downstream 3560 1798498 ~ 1799324 (+)
G105039 NA non-coding downstream 4735 1799673 ~ 1799993 (+)
G105041 NA non-coding downstream 10758 1805696 ~ 1806063 (+)
G105033 NA non-coding downstream 11965 1806903 ~ 1807667 (+)
G105115 NA non-coding downstream 15138 1810076 ~ 1810305 (+)
G105042 NA other upstream 34741 1708969 ~ 1710557 (+)
G105036 NA other upstream 44867 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 392435 1309202 ~ 1390936 (+)
G104761 NA other upstream 591549 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 872783 860459 ~ 872515 (+)
G106019 NA other downstream 725778 2520716 ~ 2527972 (+)
G106122 NA other downstream 923023 2717961 ~ 2718525 (+)
G106240 NA other downstream 1179885 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1411859 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1572267 3350582 ~ 3487129 (+)

Expression


Co-expression Network