slc6a3 (slc6a3)


Basic Information

Item Value
gene id slc6a3
gene name slc6a3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1816808 ~ 1853570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935153.1
gggggttGTGTCATATTTCTAGTGGTCCCACAGATCCCTCCTTACAGACTTACAGAACAACAGGTGAAACGGACCCTTACAGAGCAGTCTAGTCCCCAACCCAGAGGTCCACACACCTCCGAACCCCcagacatctctctctttctttctccttctctattcctctctctgtctccccatttGCCTTCTTCGGTTCCAGGTCTGAGTTCCAACCATCCGAGGTCTTCCATGATGTTCATCAGTAACAGAGTCTGGATGGAGGAAGAGCAACAACGCAGTAGGAATTAAAACGGGTTGAAGAtacatttttgggaaaaaaagaCCACAAGGTTTTATTTCCTCGTCATCTATAAAGCTGATTCCCTCTGCAGCCATGGAGCAGCCCGTGATGAAAGCCAGatctccagtgggtcagatgtgtTCGGTGGTGGCACCCGCCTCGGCCAAGCAGCCTTCCTCcgccccctctccctccaacacCATGGGCCCCAAGGAGGTGGAGCTGATTCTGGTTAAGGAGCACAACGGGGTCCAGTTCACCACCTCCACGTTGGTCAGCCCTGCTGGGCACCCCCACGGCCTTGCTCTGGGCCCCAGTCACGGACACACCCCTGTCCccggagaagagagggagacctGGGGGAAGAAGATCGACTTTCTCCTGTCTGTGATAGGGTTCGCTGTGGACCTGGCCAACGTGTGGAGGTTCCCCTATCTCTGCTATAAGAACGGAGGAggAGCGTTCCTGGTGCCCTATCTGTTCTTCATGGTGATAGCAGGCATGCCTCTGTTCTACATGGAACTGGCTCTGGGACAGTACAACAGAGAGGGGGCCGCTGGTGTCTGGAAGATCTGCCCTATATTCAAGGGTGTTGGTTTCACAGTGATCCTGATCAGTCTGTACGTGGGCTTCTACTACAACGTGATTATAGCCTGGGCCCTGTTCTACCTGTTCTCTTCCTTCACCGGAGAGCTGCCCTGGGTCCACTGTAACAACACCTGGAACAGCCCCAACTGCTCGGACCTCTGGGCCTTCAACAACTCCCTCAACGACACACACAAGTCCACCCCCGCAGCCGAGTACTTTGAGCGTGGGGTGCTCCACCTACAGGACAGTGAGGGTATAGCTGACCTGGGTCTGCCTCGTTGGCAGCTGACATCCTGTCTAGCTGTGGTCATCGTGGTTCTCTACTTCAGCCTCTGGAAGGGGGTCAAGACCTCAGGGAAGGTTGTGTGGATCACAGCCACCATGCCCTACGTGGTCCTGACCGTCCTGCTGCTGCGTGGGGTCACCCTCCCTGGAGCCATGGATGGCATTAAGGCCTACCTCAGCGTCGACTTCCTACGACTCTGTGAGCCTCAGGTCTGGATAGACGCTGCCACTCAGATCTGCTTCTCTTTGGGAGTCGGGTTTGGTGTGCTAATAGCGTTCTCCAGCTATAACAAATTCAGCAACAACTGCTATAGAGATGCCATCATCACCAGTTCCATCAACTCCCTGACCAGCTTCTTCTCCGGCTTCGTCATCTTCTCCTTCCTGGGTTACATGTCCCATAAACACAGCGTGCCATTGGACAAGGTGGCCACAGACGGTCCTGGTCTGGTGTTCATCATCTACCCAGAGGCCATTGCAACATTACCAGGATCCTCAGTGTGGGCAGTCATCTTCTTCATCATGCTGCTGACTCTGGGCATCGACAGTGCTATGGGAGGGATGGAGTCAGTGATCACAGGATTGATGGATGAGTTCAAGTTTCTCCACAAACACCGGGAACTCTTCACCCTCTTCATCGTTGTGTCCACCTTCCTAATCTCACTGTTCTGTGTCACTAATggtgGCATCTATGTGTTCACTCTGCTGGACCATTTTGCTGCTGGGACATCCATTCTCTTTGGAGTGCTTATTGAGGCCATCGGCATCGCCTGGTTCTacgGAGTGGATCGGTTCAGTGACGACATCGAGGAGATGATCGGACAGAGACCAGGCCTGTACTGGAGACTGTGCTGGAAGTTTGTCAGCCCGTGCTTCCTCCTGTTCATGGTGGTGGTGAGCTTCGCGACCTTTAACCCTCCTAACTACGGGACGTACACGTTTCCCATATGGGCCAACATGATTGGCTGGTGCTTGGCTATATCCTCCATGACCATGGTGCCTCTCTATGCCATGTACAAGATGTGCACCTTACCTGGAAAGTTCTGTGATAGACTGGCCTACGCCATAACGCCTGAGCACGAACACCACCTGGTGGATAACGGAGAAGTTAGGAGGTTTACGCTCCAACACTGGATGGTGATCTGAGCCCAGGAAGAAGACAGAGGTCCGTTCAcatggaggatggatggatagagagagcgagggagggatggatagagtgagtgatggagggatggatagagtgagtgagtgatggatggctagagagagggaaggatggatggatggatagagagagggaaggatggatggatggatagagagagtgatggagggatagagtgagggatggatggagggatagagtgagggatGGATGGCTAGAAGGAGGCACGGCAGACATGCGAAGAGAGTTTATCCCGtaacaagaggagagagaagtgttTGAAATGCCAACCAAGCTGTCAAATCGTAGTGGTCTTTAATTTCCTCAATGGACGTGTGGTTGTGTGCTGTGATCTAGATCAGGATGTTGGTGATGTTCGGTCAAAATATCAATCTTAAACAATGACTGTTATGATTATGGATAATACACCTATATATTCATGTTTAATTTGTGAGCTGAGGAAAAATCTGAGCATTTGGTTTAGTGTAAAATATATTATATGATTATCTGTTGTAGAGGTAACTAAGAGAAATAGTATTTATTACAGAAACAACATAGCCAATAACAAAAGGACATGACTGTATTTAACTGTATATGAAAGTGTACATGTTTTAAGTTAAGTTTGTGACAACATATACCCGTTACATAGTAAACTAGCTTTTTATATTGTGCCAACAGTTTCCTTTTGACACTTCAAAAATGTGTTGTCTGTTACTTCTCTTCtgaaaatgttttcaaatgtaccGAGGGGGGGtccacccttgataaagatgagaaaaaaataaatattaaataaattatttaaatactgagctatg

Function

symbol description
slc6a3 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including dopaminergic neurons; forebrain; male organism; medulla oblongata; and retina. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; nicotine dependence; and obesity. Orthologous to human SLC6A3 (solute carrier family 6 member 3).

NR:

description
PREDICTED: sodium-dependent dopamine transporter

GO: NA

KEGG:

id description
K05036 SLC6A3, DAT; solute carrier family 6 (neurotransmitter transporter, dopamine) member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935153.1 True 3139 mRNA 0.50 16 1816808 1853570

Neighbor

gene id symbol gene type direction distance location
LOC110514512 LOC105016610 coding upstream 21870 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 109133 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 118439 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 210035 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 227440 1588820 ~ 1589368 (+)
LOC110511503 LOC106605726 coding downstream 11795 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 262983 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 312551 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 564616 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 1124666 2978236 ~ 2978524 (+)
G105116 NA non-coding upstream 5000 1811581 ~ 1811808 (+)
G105115 NA non-coding upstream 6503 1810076 ~ 1810305 (+)
G105033 NA non-coding upstream 9141 1806903 ~ 1807667 (+)
G105041 NA non-coding upstream 10745 1805696 ~ 1806063 (+)
G105039 NA non-coding upstream 16815 1799673 ~ 1799993 (+)
G105122 NA non-coding downstream 447 1854017 ~ 1854230 (+)
G105119 NA non-coding downstream 739 1854309 ~ 1854718 (+)
G105121 NA non-coding downstream 1590 1855160 ~ 1855480 (+)
G105120 NA non-coding downstream 2014 1855584 ~ 1857117 (+)
G105136 NA non-coding downstream 7666 1861236 ~ 1861734 (+)
G105042 NA other upstream 106251 1708969 ~ 1710557 (+)
G105036 NA other upstream 116377 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 463945 1309202 ~ 1390936 (+)
G104761 NA other upstream 663059 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 944293 860459 ~ 872515 (+)
G106019 NA other downstream 667146 2520716 ~ 2527972 (+)
G106122 NA other downstream 864391 2717961 ~ 2718525 (+)
G106240 NA other downstream 1121253 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1353227 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1513635 3350582 ~ 3487129 (+)

Expression


Co-expression Network