LOC110516539


Basic Information

Item Value
gene id LOC110516539
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2116553 ~ 2120455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935200.1
AGCTGTCTATACAGTCACCAAGCTCCTTGTTAAAGCCCAGCATTGGGCTCAGTGGGATAATCAAACATCTGTGGATTGAATCATCATGAAGTACCTTTTGACCCCCCTCATCATGCTAATCCGTTAGTGATATGTGAAAGGGGGCTGGACTTATGACCTTACCTTTTAAATCTCTGTGTATCTCAGCATAGAGGCTTCTCTCGTTCCATCCCACACTAGATTCAGGACTGTTTTTgttccccaccaccaccagtGACAACATGGCAAAGACAATGGTACTTGAGCTGAAGAATGTGAAGCTGAGAGCTGGAGACCAGTTGAAAGTGGAGGGGAGGATTCTGCCTGAGGCGAAGGGGTTTCAGATAGAACTGGGCTGTGACGAAGATCACCTGGCACTGCACTTCAACCCACGTTTTGAGGATGACACGGACGGTGCTGTGCTTGTGTGCAACTCCAAGATTGACGGCTGCTGGGGtcacgaggagagagagaaacacagtgacctccaaaGGGGTTCTACTGTCAAGaTTGTCCTGAAGCTGACCGGAGACGTGTTTGAAGTGGAGATGCCTAATGGACATGAGATCAAATTCCTCAACCGTACCGTCCTGGACGTCATTACCTACGTCCGTGTCAGAGGGGACTTAAAGCTCACCGCCTTTAAGATCTACTAAAGAGACCCATAATAACCACCTTGTGTAGCCTGGCAACAACGGCACGGCCAGTTTGTCTTCCAATTTCCGGTGCGTTCCGGCCCAATGACACACAAGCAAGTGGGCGGGGCTACATGTAGAGTTAGACCAATGGGCAGTAAGACAGGATCAATGGCCTGCATCAAATAGTACATGGAAATATGGGGTGACCATGGTATGTTTTGTTGTCACAATATTCTGACAAACAGTAAACACAAGGGACAACTGGGGACGAGGTTAGGATACTGGGTTAGGATACTGGGTTAGGATACTGGGTTAGGATACTGGGTTAGGATACTGGGTTAGGATACTGGGTTAGGATACTGGTTAGGATACTGTCAACTAATTACATTCCTTTACAAATACAGacgtattacacacacacacatcttggcCGGATGAAATATCAGTCAATGTTTTACTTGTTTTGGTGAGAAAGAATTTATTCTTATACCGTAGTAGCCCAAATGATTACATTATTACTGACCTAATCTCTCATGTTCTGATACTGTAGTAACCCAAATGATTACATTATTACTGACCTAATCTCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGACCTAATCTCTCATGTTCTGATACTGTAGTAACCCAAATGATTACATTATTACTGACCTAATCTCTCATGTTCTGATACTGTAGTAACCCAAATGATTACATTATTACTGACCTAATCTCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGACCTAATCTCTCATGTTCTGATACTGTAGTAACCCAAATGATTACATTATTACTGACCTAATCTCTCATGTTCTGATACTGTAGTAGCCCaaattattacattattactgACCTAATCGCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGACCTAATCTCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGATCTAATCTCTGATGTTCTGATACTGTAGTAACCCAAATGATTACATTATGACTGATCTAATCTCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGATCTAATCTCTGATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATGACTGATCTAATCTCTCATGTTCTGATACTGTAGTAGCCCAAATGATTACATTATTACTGACCATGTCGACAGATTGGGTCAACAACAGAATAGCCGTTGACTCCAGAAGCATGGCGTAATTTTTACGATGATTTCCAAATGTTATTTTCTGTATACATTGAATGAAGTAAAACATCATGGACGCATGTCATGTCATCAATAAAGTTCAGCATCCTCAAGTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935200.1 True 2056 mRNA 0.41 4 2116553 2120455

Neighbor

gene id symbol gene type direction distance location
LOC110511503 LOC106605726 coding upstream 215105 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 262983 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 321615 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 408878 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 418184 1683561 ~ 1698369 (+)
LOC118944029 NA coding downstream 45666 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 297731 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 857781 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 858331 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1286732 3350582 ~ 3487129 (+)
G105572 NA non-coding upstream 8925 2103381 ~ 2107628 (+)
G105571 NA non-coding upstream 14913 2100955 ~ 2101640 (+)
G105556 NA non-coding upstream 49627 2065137 ~ 2066926 (+)
G105548 NA non-coding upstream 66239 2048681 ~ 2050314 (+)
G105536 NA non-coding upstream 86587 2028765 ~ 2029966 (+)
G105639 NA non-coding downstream 3040 2123495 ~ 2124035 (+)
G105642 NA non-coding downstream 12300 2132755 ~ 2133621 (+)
G105654 NA non-coding downstream 28011 2148466 ~ 2148711 (+)
G105670 NA non-coding downstream 39117 2159572 ~ 2160487 (+)
G105672 NA non-coding downstream 40360 2160815 ~ 2161029 (+)
G105042 NA other upstream 405996 1708969 ~ 1710557 (+)
G105036 NA other upstream 416122 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 763690 1309202 ~ 1390936 (+)
G104761 NA other upstream 962804 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1244038 860459 ~ 872515 (+)
G106019 NA other downstream 400261 2520716 ~ 2527972 (+)
G106122 NA other downstream 597506 2717961 ~ 2718525 (+)
G106240 NA other downstream 854368 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1086342 3006312 ~ 3391033 (+)

Expression


Co-expression Network