LOC118944029


Basic Information

Item Value
gene id LOC118944029
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2166121 ~ 2177996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961504.1
ATGTCTGCCTTCTTCCACTTTCTCTGTGTGAGGATCATGTCTGCCAACTTCCACGGAAgtgtgccccctCCTGACCCCTCCATCCagccccctccatcctccacacaGCCTTACCCCTCCATCCAGCCCCCTCAGTCCTCCAAACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGGCCCCTCAACCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCCTCAATCCTCCACACAACTGACCGCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCAGTCCTCCACACAGCCTAAACCCTCCATCCAGCCCCCTCAGTCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCTCCGTCCTCCACACAGCCTTACCCCTCCATCCagccccctccatcctccacacaGCCCCTCAACCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCCTCAATCCTCCACACAGCCTGACCGCCTTATCCagccccctccatcctccacacaGCCTGACCACTCCATCCAGACCCCTCAAATCTCCACACAGCCTACACCCTCCATCCAGCCCCCTCCGTCCTCCACACATACTGACCCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCACCTGACCCCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCCGTCCTCCACACAGCCTTACCCCTCCATCCagccccctccatcctccacacaGCCTGATCCTTCCATCcagccccctccatcctccccacaGCCTGACCCCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAgcccccctccatcctccacacaCCTGATCCCTCCATCCAGCCCCCTCCGTCCTCCACACAGTCTACACCCTCCATCCagccccctccatcctccacacaGCCTGACCGCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCAATCCTCCACACAGTCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCCACACAGTCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCCTCAATCCTCCACACAGCCTACACCCTCCATCCAGCCCCCTCAATCCTCCACACAGTCTACACCCTCCATCCAGCCCCCCTCCATCCGCCACACAGCCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCCTTTAG

Function

NR:

description
PREDICTED: inactive phospholipase C-like protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961504.1 True 1518 mRNA 0.63 6 2166121 2177996

Neighbor

gene id symbol gene type direction distance location
LOC110516539 NA coding upstream 45666 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 264673 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 312551 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 371183 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 458446 1704889 ~ 1707675 (+)
LOC118944030 NA coding downstream 240190 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 800240 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 800790 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1229191 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1872787 4050783 ~ 4065607 (+)
G105673 NA non-coding upstream 3081 2161395 ~ 2163040 (+)
G105672 NA non-coding upstream 5092 2160815 ~ 2161029 (+)
G105670 NA non-coding upstream 5634 2159572 ~ 2160487 (+)
G105654 NA non-coding upstream 17410 2148466 ~ 2148711 (+)
G105642 NA non-coding upstream 32500 2132755 ~ 2133621 (+)
G105683 NA non-coding downstream 6052 2184048 ~ 2191289 (+)
G105694 NA non-coding downstream 34327 2212323 ~ 2213776 (+)
G105700 NA non-coding downstream 45203 2223199 ~ 2223419 (+)
G105702 NA non-coding downstream 47722 2225718 ~ 2226088 (+)
G105704 NA non-coding downstream 49474 2227470 ~ 2227727 (+)
G105042 NA other upstream 455564 1708969 ~ 1710557 (+)
G105036 NA other upstream 465690 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 813258 1309202 ~ 1390936 (+)
G104761 NA other upstream 1012372 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1293606 860459 ~ 872515 (+)
G106019 NA other downstream 342720 2520716 ~ 2527972 (+)
G106122 NA other downstream 539965 2717961 ~ 2718525 (+)
G106240 NA other downstream 796827 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1028801 3006312 ~ 3391033 (+)

Expression


Co-expression Network