LOC118937335


Basic Information

Item Value
gene id LOC118937335
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2273420 ~ 2440302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034602.1
GTAGAGGGCGGGACTGAAACTGGAATGAACAAGGCGCGGCCAAGATTCCCCTTCACACGTGCAGACAAAGAGCGCCAACAACACAACCCAAATATGCACTTTTAAACTTTTCCAAACGAAACGGACGACTTCCACGAACATAGGAAATGCAACGGTGGAATGAAACCTGTTTAATTTGAAAAGCTTTTCTTTTTCGGGAGGCCTGCATTGGGAAAAAGTACCTTGGAGCCGTACCTTTACAACAGGAGTTTAGCTGCAGGACCTCTGAATAACCATCTACACTGTGGCGGATTTACCCGCGACCTGTACCGGACTCATGGAATCGAAATTGGATTATATCTTCCGGCGCACATCACAACAAAGGCTTTCCAAATTGGATAGGCGTCTCATCGGACCCTCAAGGACAACATGGACTTGGAACCATTTTTATCTCCTAGAAACATGAAGAAAATGAAATATTCTACATTTCTGTGGATATCCATGGCTACAGGAAGTAGTTAAAGAGGAGCCGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATAGCTACAGGAAGTAGTTAAAGAGGAGCAGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATACCTACAGGAAGTAGTTAAAGAGCAGAGCACCATAACTACAGCATGACAGGGGCCCCAGAAAGAGAGCATGTGTCCTTCCATCTCCTTCTCACAGGACAGGGGCCCCAGAAAGAGAGCATGGCAAAGATTGATACTGTCAAAGAGGaatgtacacacagacagacagggtagacAGAGTAGACATGCAGGCCTGGGAGACTGCCTGGCACTTACAGTACGGAGCCTGCCATGCTgcgtgagggaggaagaggggaggaaggagggaatgaaggagggagag
>XR_005034601.1
GTAGAGGGCGGGACTGAAACTGGAATGAACAAGGCGCGGCCAAGATTCCCCTTCACACGTGCAGACAAAGAGCGCCAACAACACAACCCAAATATGCACTTTTAAACTTTTCCAAACGAAACGGACGACTTCCACGAACATAGGAAATGCAACGGTGGAATGAAACCTGTTTAATTTGAAAAGCTTTTCTTTTTCGGGAGGCCTGCATTGGGAAAAAGTACCTTGGAGCCGTACCTTTACAACAGGAGTTTAGCTGCAGGACCTCTGAATAACCATCTACACTGTGGCGGATTTACCCGCGACCTGTACCGGACTCATGGAATCGAAATTGGATTATATCTTCCGGCGCACATCACAACAAAGGCTTTCCAAATTGGATAGGCGTCTCATCGGACCCTCAAGGACAACATGGACTTGGAACCATTTTTATCTCCTAGAAACATGAAGAAAATGAAATATTCTACATTTCTGTGGATATCCATGGCTACAGGAAGTAGTTAAAGAGGAGCCGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATAGCTACAGGAAGTAGTTAAAGAGGAGCAGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATACCTACAGGAAGTAGTTAAAGAGCAGAGCACCATAACTACAGCATGTAAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcaccataactacagcatgttagttcaagaggagcagagcagagcaccaTAACTACAGCATGTTCGTTCAAGAGGGACAGAGCAACATAACTACAGGATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGCGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCATCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagTACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGGTATTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGATAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGATAGTTCAAGAGGGACAGAGCACCATAACTTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcaccataactacagcatgttagttcaagagggacagagcagagcaccataactacagcatgttagttcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTGAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAAGGACAGAGCACCATAACTACAGCATGTTAGTTGAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGT
>TU119549
ACAAAGAGCGCCAACAACACAACCCAAATATGCACTTTTAAACTTTTCCAAACGAAACGGACGACTTCCACGAACATAGGAAATGCAACGGTGGAATGAAACCTGTTTAATTTGAAAAGCTTTTCTTTTTCGGGAGGCCTGCATTGGGAAAAAGTACCTTGGAGCCGTACCTTTACAACAGGAGTTTAGCTGCAGGACCTCTGAATAACCATCTACACTGTGGCGGATTTACCCGCGACCTGTACCGGACTCATGGAATCGAAATTGGATTATATCTTCCGGCGCACATCACAACAAAGGCTTTCCAAATTGGATAGGCGTCTCATCGGACCCTCAAGGACAACATGGATTTTGGAGGCCATGGCAAGATGACGCAGAGACGGGAATTCAGAAGGAGATGTGATTGGTCGGCTTGTTTCGCgatatccaattgcgatcttgtctcatcgcttcatctccccaacgggctcgggagCGGAAGCCAggtgcaccaatgtgtcagaggaaaacc
>TU119552
cacCATAACTACAGGATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagTACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGGTATTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGATAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGATAGTATATTACCGGCTAATAATATGATATAATGATATATGATCCACTCAGGTTGAACACAGTTCCATGCTGTATTCATCTAGAAACCCAGTTAGTTTGTTAAGTCTCTGTTAAGTCTCTGTTAAGTCTCTGTTAAGTCTCTGTTTATCCACTCAGGCTGAACACAGTTCCAGAGTCctgc
>TU119551
ACAAAGAGCGCCAACAACACAACCCAAATATGCACTTTTAAACTTTTCCAAACGAAACGGACGACTTCCACGAACATAGGAAATGCAACGGTGGAATGAAACCTGTTTAATTTGAAAAGCTTTTCTTTTTCGGGAGGCCTGCATTGGGAAAAAGTACCTTGGAGCCGTACCTTTACAACAGGAGTTTAGCTGCAGGACCTCTGAATAACCATCTACACTGTGGCGGATTTACCCGCGACCTGTACCGGACTCATGGAATCGAAATTGGATTATATCTTCCGGCGCACATCACAACAAAGGCTTTCCAAATTGGATAGGCGTCTCATCGGACCCTCAAGGACAACATGGGTAGGTTAGCCCGCTTCCACAGCAATTTCTTCAGGGAAGACTTGTGGAGTGACGCTTGTTTCCTAATTTGGTGCACAACATCCCATCCTAAAACTAAGTTGCACTTGTAGTGCGTATTTCAGAGTTGCAGTGCATATTTCAGAGTTGCAGTGCATATTTCAGCGTTGCAGTGCATATTTCAGCGTTGCAGGGCGTATTTCAGTTGCAGGGCATATTTCATAGTTGTAGTGTGTATTTGAGAGTCCCAATGTGCATTCCAGAGTTGCAGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034602.1 False 1063 mRNA 0.47 4 2430275 2440302
XR_005034601.1 False 3078 mRNA 0.45 3 2431765 2440302
TU119549 False 511 lncRNA 0.48 5 2273420 2440238
TU119552 False 770 lncRNA 0.47 3 2431050 2433184
TU119551 True 620 lncRNA 0.45 3 2438014 2440238

Neighbor

gene id symbol gene type direction distance location
LOC118937333 NA coding downstream 126394 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 504336 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 697942 1709516 ~ 1732333 (-)
kiaa1143 k1143 coding downstream 725412 1702951 ~ 1704863 (-)
LOC110515405 LOC106590999 coding downstream 746786 1573402 ~ 1683489 (-)
sox4b sox4 coding upstream 6072 2446374 ~ 2449761 (-)
LOC110512766 LOC106593784 coding upstream 73408 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 77885 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 93500 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 204588 2644890 ~ 3391012 (-)
G105964 NA non-coding downstream 16166 2413523 ~ 2414109 (-)
G105959 NA non-coding downstream 23726 2406019 ~ 2406549 (-)
G105955 NA non-coding downstream 27778 2401450 ~ 2402497 (-)
G105951 NA non-coding downstream 43558 2385595 ~ 2386717 (-)
G105945 NA non-coding downstream 54027 2375360 ~ 2376248 (-)
G105988 NA non-coding upstream 22509 2462811 ~ 2463049 (-)
G105990 NA non-coding upstream 24061 2464363 ~ 2464637 (-)
G105992 NA non-coding upstream 29271 2469573 ~ 2470510 (-)
G105994 NA non-coding upstream 32892 2473194 ~ 2474519 (-)
G105995 NA non-coding upstream 34390 2474692 ~ 2475026 (-)
G105938 NA other downstream 66744 2362999 ~ 2363531 (-)
G105636 NA other downstream 309774 2118079 ~ 2120501 (-)
G105492 NA other downstream 468688 1958484 ~ 1961587 (-)
G105428 NA other downstream 512248 1917351 ~ 1918027 (-)
G105427 NA other downstream 513280 1912592 ~ 1917188 (-)
G106001 NA other upstream 42639 2482941 ~ 2483356 (-)
G106003 NA other upstream 43558 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1312259 3705036 ~ 3924570 (-)
G107456 NA other upstream 1551024 3991326 ~ 3992847 (-)
G107574 NA other upstream 1855123 4295425 ~ 4296815 (-)
LOC110515934 gadl1 coding downstream 816287 1427251 ~ 1457133 (-)
G105769 NA non-coding downstream 2418 2270621 ~ 2271002 (-)
G105768 NA non-coding downstream 12846 2260318 ~ 2260574 (-)
G105763 NA non-coding downstream 15703 2257501 ~ 2257717 (-)
G105759 NA non-coding downstream 17008 2256209 ~ 2256412 (-)
G105754 NA non-coding downstream 22414 2250248 ~ 2251006 (-)
G105340 NA other downstream 631688 1641267 ~ 1641732 (-)

Expression


Co-expression Network