sox4b (sox4)


Basic Information

Item Value
gene id sox4b
gene name sox4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2446374 ~ 2449761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593876.2
TGCACGGGGAGAAATTAGAGGCTGCTGAAAGTTACCGAGTGCGCAGCAGAAAGGTAGATCCTAGTTCTAGTGAAACAAGCTTCTTCCCGCATGGTGCTCGGAAAGAAAAGCTATGCAGAAAAAGAGTTACCTTACTTTAGAAACTTTGAACATTTTCAGTGTCAGTGCGCTCACACAGCCACTCAGTTTGCTTTCCGCTGCTTACACGGCACATGTTTATGTCCTACACGACTGCTAGAGTTGATTAGCTTAGGCTACATAAAGCATTGTCGGAGGAAACAGAGTGGAAAACGGGGGACAGTTTTACACCGTTCGTTCTGTATCATATTACAGAGACTCgaaaaaaataacttttaacaaATCCAGCATTTTTTAACGGCTATCAACGGATTCCTGTGGTTCCGGTTCGGCACATCTCAGGACTGACTTCTATTTTCACACAGCCAGCTAGAATTGTAAAGTAAaataattttatttaaaaaaaataaacctaCAGTGTGGAACTGAACTGGAGAGCAAGCAGGCGCACTCTCATTGACATTATAATCATGGTACAGAAGACAAGTAATGCGGAGAGCTCCGAGGCTGTGTTCGAGGGAGAGTCGTCCGATTCCGGAGCTATGGACCTGGACATGGCATCCTCACCGAGCCCCGGATCCACGGCTTCTTCCGCGGGGGAAGGCAAACTGAACCCCGCCTGGTGCAAAACACCCACCGGTCACATCAAGAGGCCGATGAACGCTTTCATGGTGTGGTCACAGATTGAAAGGCGTAAAATTATGGAGCAGTCACCGGACATGCACAACGCGGAGATATCCAAGAGACTGGGCAAGCGCTGGAAGCTACTGAAAGACTGCGACAAGATCCCCTTCATACGAGAGGCGGAGCGGCTCAGACTCAAGCACATGGCGGACTACCCAGACTACAAGTACCGGCCCAGAAAGAAGGTGAAGTCCAGCAGCTCCAAACCGGGGGGCGAGAAGGAGGGAAAGGTCAGCGGTAGCAACTGTAACACCAGCATGAAACAATCTTCTAAAAAGAGTGGCTCAAAATCATCCAGTAAACCTCATAAAATCGTTTTTGGGAACAGCACCAAAACACCATCATTCCCAGAACAAGTCATCGGCACAGATCACCATTCTCTTTACAAATCCAAGTCTGTTTCTGCTGCCAAACAAATACCTGACAAGAAGAAGCGTATGTATGTGTTCGGGGGCAGCAGCCTTAGCCACAGTGTGAGCCCGTCTTCAGCAGCGGTGCCCGCCAGTCCCACACTCAGCAGCTCCGCGGATTCCAGCGAACCACTCAGCCTGTACGAGGACGCGACAGCCAGCAGCAGGCAGGGCGGCGAGTCTCCCTCCAGCGCCTCGGAAGACTACACTACTATGCGGGCgtcctctcctactccctccgCTTCTcactcctcgtcctcctcccaaTCCTCTTCATCAGATGAGGAGTTTGAGGATGATCTACTGGACATTAACTCTAGCCCTGGTTTTGACAGCATGTCTCTGGGAAGCTTTGGGTCCTCGGTTTTGGACAGAGACTTGGATTTTAATTTCGAGTCGGGCTCCGGTTCTCACTTTGAGTTTCCCGACTACTGCACCCCAGAGGTGAGCGAGATGATTTCAGGAGACTGGCTAGAGTCGACCATTTCTAATTTGGTGTTCACGTATTGAGCGAGAGAAAAGGAGAACGAGAAAACCCACAAGCAGGAAATGTTGTCTTACTATTCTGAGCAAAAAAAGGGATTCCGGTAAAGTGATTTTGTGTCATACCGTAACCTACCAAGGGTCCCTCCCGCCGAGAAAGAGACTGCAAGTCCCCACGCGCTGACTGTTGAACAAAGCGAGAGAATAACTTGCTTTTTATTTCAAGAATCAACTGTCGACTGTTATTATGAGACACGGCTACAAGTAAGCAGAAGTATTGCCTCGACTGGAGAGGAAGATATTGTTGCGCCCTGAGTAGGAGTGATCGGGTCCTATTGAAATAAACACTCGATCAGAACTGGAAaactgtgattgatttgcacgaTTATAATGATGGCGGGTTTAGGTCAGCTATACTTTATTAATCAATGTGAGTTACTTAAAAGGGACATGTTGAGAAACGTTTTATGATCGCCAAGTGAACTTCAACAGACTTGCAGAGGTACAGAAATAGGCTGGATGTCTGGacggttttttgttgttgtcatcgAGGCAGATGGATTTATGAACCAGGTGGGTTGTTGACCTAAAAAGTCTAACCTTTTTTAAAAGATAAAACGCATGATGTTACCTGTCCTCTGTTTTACTGAGATGTATGTTAGACTGTCGAACAGTTGAAACTAGTTTTAGGGTTATTTAAATGGATAGATGGGCGCTATGTTtgattcctttttttttttacctaaaaGGAACCAAAAAAAATCACCAGCTGTTTTAATTCTTAACTTCAGGATTCAAACGCAACTGAAATCTGTGCTGAACTTTATACACATCTCTACAATTCAGGACCAaaattattttatgttttttCTGATGTTATGTATAGAGAAATTCTCAccgaattattttttttttcatcctCGAATTTCCTTTTGTTCATTTTTTCAGAGGACATTTTTATATGATGTATTTATATACTGGCCAAAACATTTTCaacttaattattattattatttttttcttgtaCTGGTCTTGTTATAATGTTTTCCCTCACCGTCTGTTTCCTTCGCTGAAAGAAGGGCTAGACTTTTCACTTTTGATTTTTTATATTTAAATGTAGACTTTTGACACTTAAAGAGAGGAAACATTTGTTTATTTTGTCCGTGTATTTTTGTACAGATATATATCAAAGGGGGTGTCAATCGGTGTATATCGCTGTTTGGATTTCCTAATTTTAAAGATCCAGGTGGCCGGTTATCTCATGAATCGGCCTTCTGTCCATGTTTACAGTATCAATCTGCAGGCTTCTTAAAGACACAGTACCACATTTCAATACCCCTGTGAACATGCGcttcaactcacacacacacacacacacacagtattttgAGCAGGCACACTTCTGCATTTCATTTTAGAATCTTGCCTAATAAAGAAAGATTGTAGCTTTAAATGAACAATTTATTGGGTTTAAAACCACCGGATGGAAGAATATCAAATCATATAAAGTAATATTCAAATTGGGTATTTTGAGTTCCCGCAAACAACAATTATGTAGACCAACTGCTTTTCTCATTGTATTTGAATATGTAATCTTTTCTACTTGTTCGCTAACTCTAGCTAATTGTTTTAGTATCTTATGGCATGGTGAATGAATAGTATTTTGTATTTCAGATTCAGGTTATAGctgttgtgtttatatatatatatatataaaaaaaaagataaaaaaa

Function

symbol description
sox4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including DNA damage response, detection of DNA damage; DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; and regulation of cellular protein metabolic process. Located in mitochondrion and nucleoplasm. Implicated in Coffin-Siris syndrome and urinary bladder cancer.

NR:

description
transcription factor SOX-4-like

GO: NA

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593876.2 True 3388 mRNA 0.42 1 2446374 2449761

Neighbor

gene id symbol gene type direction distance location
LOC118937335 NA coding downstream 6072 2273420 ~ 2440302 (-)
LOC118937333 NA coding downstream 142493 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 520435 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 714041 1709516 ~ 1732333 (-)
kiaa1143 k1143 coding downstream 741511 1702951 ~ 1704863 (-)
LOC110512766 LOC106593784 coding upstream 63949 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 68426 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 84041 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 195129 2644890 ~ 3391012 (-)
LOC118937342 e2f3 coding upstream 942885 3392063 ~ 3405112 (-)
G105964 NA non-coding downstream 32265 2413523 ~ 2414109 (-)
G105959 NA non-coding downstream 39825 2406019 ~ 2406549 (-)
G105955 NA non-coding downstream 43877 2401450 ~ 2402497 (-)
G105951 NA non-coding downstream 59657 2385595 ~ 2386717 (-)
G105988 NA non-coding upstream 13050 2462811 ~ 2463049 (-)
G105990 NA non-coding upstream 14602 2464363 ~ 2464637 (-)
G105992 NA non-coding upstream 19812 2469573 ~ 2470510 (-)
G105994 NA non-coding upstream 23433 2473194 ~ 2474519 (-)
G105995 NA non-coding upstream 24931 2474692 ~ 2475026 (-)
G105938 NA other downstream 82843 2362999 ~ 2363531 (-)
G105636 NA other downstream 325873 2118079 ~ 2120501 (-)
G105492 NA other downstream 484787 1958484 ~ 1961587 (-)
G105428 NA other downstream 528347 1917351 ~ 1918027 (-)
G105427 NA other downstream 529379 1912592 ~ 1917188 (-)
G106001 NA other upstream 33180 2482941 ~ 2483356 (-)
G106003 NA other upstream 34099 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1302800 3705036 ~ 3924570 (-)
G107456 NA other upstream 1541565 3991326 ~ 3992847 (-)
G107574 NA other upstream 1845664 4295425 ~ 4296815 (-)

Expression


Co-expression Network