LOC110512766 (LOC106593784)


Basic Information

Item Value
gene id LOC110512766
gene name LOC106593784
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2513710 ~ 2516419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961511.1
atttccaagtgaccccaaacttttgaatggttttggatatcatgattatttgcataaATTAGGAGGCCATTGTTTAGCAGTCTCTGCCATGATGTGCTGCAGCAGTAGGCCTAACAGCAGAAACATTGCTAAACTAATACATTCCTCTCCTGCTAGATGTAcaattaaaggggaattacagattttttttacatttgttagCATTTTTTTTCAGACCTCTACATTTTTCTGTtgatgtgatttaagcattgacTCAGAACATCAATTTCCATTGTTTCTCTCTGAATAATTGTAATATTGAGAGTAAAAAACAGAATTTGGAATAattcaaaataacattttatagGGCCCCCTTAGAGTTGTTATTTGACTATTATATATTGCCAGAAAACACATATCTTGTATAAGGAACAGGGGAAGAGTTGcagggttgaggagaggagaagaatttGACGATTTGAAAGCTATTAAAAAAATGAGTAGCTCGTGAAATTCATTTTTCTTTATGTAGCTgtcatgctagaaaaggttggagatccctgctgtacaggcttccttattttcactctgtcaattaggttaatattgtggaataactacaatgttgttgatcctcagttttctcctatctcAGCCATTAACGTCACCATTGACCtcaaggtgaaatccctgagcagtttccttcctctctggcaactgagttaggaaggatacccgtatctttgtagtaactgggtgtattgatacaccatccaaagtgtaattaataactggtGTAATTGATGCTCAAAGGTATATTCAATGCCTgcaatattttatatatatatatatatatatatgtgtgttgtttttttgtgCTTGGGAAGGGGTTGTCTTTTTCAACAAGTTGCTGAAATGGCTGGCCAGTTTCCAGGAGAAGCAGGAGGCCTTGGACAATGTGCACCTCCTCATTGGTCATGGGGAAAACAACATGGATGCTGCCCTCCAGGCCCTCTCTCGGGGCATAGAAACATACCAGATTCAACCCGGTTGCCTGGAGCGTTTCTTCAATGATGGCGAGGCTCCTGATGCCGGCCTTCTCCCAGACCATCTGAGTGTCCTTCCAGACTGGACTCTGCTGCCGTTGACGAACGGGACACTTCCCCCCTACATGATATACATTCTGCAGCGGAGGCCAGTGATACAGGGTATCCAAGTGGAAGATCACAGCTTACCCAGTGGGAACATCACCTCTCGGCCCATACGGCAGGCATTCTACGGGCTGCTGCTGGGTGAGGGGAGGGAAGTGGAGGAGTATGACAGGGAAGAAACAAACCTGACCAGCAGCAAGGTTAATGCCAACCTGCCCAGTGCTGCACAACAGCTGCAGCTGGACACACTGGATCAGGCTCCACATTTAGTGCGGCTTGAGGTGTTTTTGGAGACCGTTGGTGTGTCCCAGTCCACTTTGAATGGTCTCCCACTTCACCTGGGACTTCCTGTGGCTGTTACCTACTACTGGCTGAGGCACGCCCATCCCCGACCAGACCTTCCTCTCCTGCAGGCCCTGCTACTAGGACTTGTGTTCGGAGAGCTCTGCAGACAGAGGAAGAGCCAGAGAGGGTTTATAGAGGAGGGACCAGTgttggagaggatgagagggctGATTCAGAGACGTGCTATGAGTCCAGACCTGGGTGTGGCCCACGCCTATAACCAATGGCAGCGCTGCATGAGGGATGGCCTTTACCTGAACCAACTtctgtgtctccctctacctGAGCCTCAGTGTGCCTGGCTGTACAAGGGTAGTCTGCTGCACCAGCTTGTGGGCCAACTGAGACGGGGGGTGACCCCGGATTCTCTCCTGATGGAAGACCCTTCCTCTGGGCAGCTGTACAGAGCCATGCTGGAAGCCATACTCAACTCCTAG

Function

NR:

description
protein asteroid homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961511.1 True 1912 mRNA 0.46 4 2513710 2516419

Neighbor

gene id symbol gene type direction distance location
sox4b sox4 coding downstream 63949 2446374 ~ 2449761 (-)
LOC118937335 NA coding downstream 73408 2273420 ~ 2440302 (-)
LOC118937333 NA coding downstream 209829 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 587771 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 781377 1709516 ~ 1732333 (-)
LOC110514306 NA coding upstream 1768 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 17383 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 128471 2644890 ~ 3391012 (-)
LOC118937342 e2f3 coding upstream 876227 3392063 ~ 3405112 (-)
LOC118944031 NA coding upstream 924667 3441086 ~ 3443541 (-)
G106005 NA non-coding downstream 28088 2485198 ~ 2485622 (-)
G106000 NA non-coding downstream 31232 2482269 ~ 2482478 (-)
G105997 NA non-coding downstream 33160 2479196 ~ 2480550 (-)
G105996 NA non-coding downstream 36160 2475370 ~ 2477550 (-)
G105995 NA non-coding downstream 38684 2474692 ~ 2475026 (-)
G106043 NA non-coding upstream 36441 2552860 ~ 2553853 (-)
G106044 NA non-coding upstream 37578 2553997 ~ 2554368 (-)
G106047 NA non-coding upstream 39087 2555506 ~ 2555721 (-)
G106048 NA non-coding upstream 40525 2556944 ~ 2557296 (-)
G106052 NA non-coding upstream 47319 2563738 ~ 2563959 (-)
G106003 NA other downstream 28587 2483860 ~ 2485123 (-)
G106001 NA other downstream 30354 2482941 ~ 2483356 (-)
G105938 NA other downstream 150179 2362999 ~ 2363531 (-)
G105636 NA other downstream 393209 2118079 ~ 2120501 (-)
G105492 NA other downstream 552123 1958484 ~ 1961587 (-)
LOC110506994 carmil1 other upstream 1236142 3705036 ~ 3924570 (-)
G107456 NA other upstream 1474907 3991326 ~ 3992847 (-)
G107574 NA other upstream 1779006 4295425 ~ 4296815 (-)
G107576 NA other upstream 1781026 4297445 ~ 4302456 (-)
G107755 NA other upstream 1859503 4375922 ~ 4376423 (-)

Expression


Co-expression Network