cdkal1 (cdkal)


Basic Information

Item Value
gene id cdkal1
gene name cdkal
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2644890 ~ 3391012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935222.1
ACAGAAACACGTGGGTCGTTTTGCTGTGTTACTGTTCGCAAATGTTAGCTGGCAGAAAGGCCACGTTTTAAAGAGACAATATAGATCGTCATTATGCCTTCTGCTTGTGACTCCCCGATCGATGACATTGAGGACATGGTGTCAGCTGACGACCCGACTCCACAGGAGAGGCAGTATGCCAGGAAGAGCATCGTCCCCAGAGCCAGGAAGAGAAACACCCAGCAGACGACAGAGGTGCTGCAAGCAGACAGCGTGATCCCGGGCATGCAGAAGATCTGGATGAGGACGTGgggctgctcccacaacaactcaGACGGGGAATACATGGCTGGACAGCTGGCGGCGAGCGGATACAAGATGACAGaggaCCCTGCGGAGGCTGATCTGTGGCTGCTCAACAGCTGCACTGTGAAAAACCCGGCCGAAGATCACTTCAGAAACTCCATCAAGAAGGCCCAGGAGCAGGATAAGAAGGTGGTGGTAGCTGGATGTGTTCCCCAGGCCCAGCCCAGGATGGACTACCTTAAAGGACTCAGCATCATCGGGGTTCAGCAGATTGACcgtgtggtggaggtggtggacgAGGCTGTTAAAGGTCACTCGGTGCGTCTGCTGGGTCAGAAGAAGGACAACGGGAAGCGTCTTGGTGGAGCCAGACTGGATCTGCCCAAGATTAGAAAGAACCCTCTGATAGAGATCATTTCAATCAATACAGGttgTCTGAATGCCTGTACGTACTGTAAAACCAAGCATGCCAGAGGAGACCTGGCCAGCTACCCCGTGGAGGAACTCGTGGAGAGAGCCAGACAGTCCTTCCAAGagggtgtgtgtgagatctGGCTGACCAGTGAGGACACCGGGGCATATGGGAAGGACATCGGGACAGACCTGCCCACTCTGCTATGGAGACTAGTGGAAGAAATTCCCGAAGGTGCCATGCTGAGACTGGGCATGACCAACCCTCCGTACATCCTGGAGCACCTAGAGGAGATGTCTAAGATCCTGAACCATCCTCGTGTGTATGCCTTTCTCCATGTCCCGGTGCAGTCTGCCTCCGACAGTGTCCTGATGGATATGAAGAGGGAGTACTGCGCTGACGACTTCAGGCGCGTCGCTGACTTCCTGAAAGACAAggttCCTGGTATCACCATCGCAACGGACATCATCTGTGGTTTCCCAGGGGAGACGGATGCTGACTTCCAGGAGACATGTGACCTGGTGAAGGAGTATCGCTTCCCCAGCCTCTTCATCAACCAGTTCTACCCCCGGCCTGGCACCCCCGCCGCCAAGATGACCCAGGTCCCCGCCCAAGTGAAAAAACAACGGACCAAAGAGCTGTCGACCCTGTTCCACTCCTATAACCCCTACCACCACAAGATTGGGGAGACCCAGCTGGTGCTTGTGACTGAGGAGTCCTTTGACTCCCAGTACTATGTGGCTCACAACAAATACTATGAGCAGGTGCTGGTGCCCAAGAGGTCAGAGTTCAAGGGGAAGATGATTGAGGTGGAGATCTTCGAGGCCGGCAAACACTTCCTGAAGGGAAGACCGCTGGATGGCTCCGAAGTGTTCACTCCCTCCATCGCCGAGCCACTGCAGCAGGGGGAGGTGTCTGGGCTCAGTCAGGAGCAGCTGTCCCTCCAGCAGAATGGGTCCGTCCCCTCCTCAGGCGTGCTGACTGTATCCTGGAGCCCCTGGAGCCTGGACAGAGAGGGGCTGAAGCTGCTGTCTATCGGCCTGGCTGTGGTGGCTATCCTAGTGGTCTTCATGTGGGAGAAACTCCACTGAGACCGAGGAGCTGGAAGACATGGacctgggcctgtattcatagaGCGTCTCGGAGGAGGAGTGCTGATCCAACATCAGGGCCCCCTCTTTTACAATCATCCTTATATTCtacaaggcaaaactgatcctagatcagcattcatACACCGAGACTCTTTATGAATAAGGGACCTGGATCAAATAAATATGGAAATGATTTCCAAGTACTTTGTACTGGGCAAACTAAATCAAGCCTAGCTCGAGTATTTGAAAGAGTTTGACATGTTTATTTGGCCTATAGGTTTGGTTGAAATGGGTTTTGGATGGGTCCTAGTTTAGCTTTATATGAGGAAAAAAACTTCCCAGTCTTGGACAAAGACTGATGGATTCTGGAGCTGCATGTGAGAGTTAGGAAGAGGAGACGAGGGTAGGAAACAAGGAcaggagataaggagaggacaGGTTAAAGACACGTTGTGTGATACTCTGGTTTAAGATGGTGGATATCTTTAattaaaagtatttatttttaccAACAAtgaaacagacacagaggaacAGGTATATTTTTGGTAATGAATTTACATCACAGTAAAAGccacactctctgtgtctgtcgtACTGTCATACCACATTGTGATTGTTTACCaaaacatttgttgttgttttttcctctcgtgtttctctatttgtatttctgtttttatggtTTTCCATTTGAACGTCAGTCTACTACTGAGTAGACGGAGACCCCTTTGTGCCCTGGTATGAAGTAgttagagaacagggtgccatttgggatgctgtgaTGTTACGGTGTGAAACTGCATGTTGTTTGGATTCTATTCATGTACATCTCAGCAGTAGATCATCTCCTATCCCAGGGGACTTATTGTCTGGTCTAGATCCCTGTCtgcctctcaaatggcaccctattccctttatagtgcactactttccaccaggactggcaccctattccctatatagtgcactacttttcaccaggaccctatggggggggggggggggggggtctggccaaaggtagtgcactatatagagaatagagtgtAATTTGAAACACAGACttgacagtgttttctcatcttTGTTTGCAGTGTAAAGCTAACCTTAATAAACCTTAATAAACCAAAACTCCATgc
>XM_036935217.1
cacctgatctagCCTCTTCCTACCTGCCTTCCATCTTTACGGACATGTATTTCCATCGTTAGAGCGGCGAATCGACtctcttgtcaatataatagacaatCTTTGTGTCAGAGCTGATCATAACAACCTTCCAGCTAGCAGCTTTGAGTTTGTCTTCCACTTGAGAGTGGACATTTATTAGTGCCGTGTTAACGACTGAAGTAATAACCGGACATAAACACAGATCGTCATTATGCCTTCTGCTTGTGACTCCCCGATCGATGACATTGAGGACATGGTGTCAGCTGACGACCCGACTCCACAGGAGAGGCAGTATGCCAGGAAGAGCATCGTCCCCAGAGCCAGGAAGAGAAACACCCAGCAGACGACAGAGGTGCTGCAAGCAGACAGCGTGATCCCGGGCATGCAGAAGATCTGGATGAGGACGTGgggctgctcccacaacaactcaGACGGGGAATACATGGCTGGACAGCTGGCGGCGAGCGGATACAAGATGACAGaggaCCCTGCGGAGGCTGATCTGTGGCTGCTCAACAGCTGCACTGTGAAAAACCCGGCCGAAGATCACTTCAGAAACTCCATCAAGAAGGCCCAGGAGCAGGATAAGAAGGTGGTGGTAGCTGGATGTGTTCCCCAGGCCCAGCCCAGGATGGACTACCTTAAAGGACTCAGCATCATCGGGGTTCAGCAGATTGACcgtgtggtggaggtggtggacgAGGCTGTTAAAGGTCACTCGGTGCGTCTGCTGGGTCAGAAGAAGGACAACGGGAAGCGTCTTGGTGGAGCCAGACTGGATCTGCCCAAGATTAGAAAGAACCCTCTGATAGAGATCATTTCAATCAATACAGGttgTCTGAATGCCTGTACGTACTGTAAAACCAAGCATGCCAGAGGAGACCTGGCCAGCTACCCCGTGGAGGAACTCGTGGAGAGAGCCAGACAGTCCTTCCAAGagggtgtgtgtgagatctGGCTGACCAGTGAGGACACCGGGGCATATGGGAAGGACATCGGGACAGACCTGCCCACTCTGCTATGGAGACTAGTGGAAGAAATTCCCGAAGGTGCCATGCTGAGACTGGGCATGACCAACCCTCCGTACATCCTGGAGCACCTAGAGGAGATGTCTAAGATCCTGAACCATCCTCGTGTGTATGCCTTTCTCCATGTCCCGGTGCAGTCTGCCTCCGACAGTGTCCTGATGGATATGAAGAGGGAGTACTGCGCTGACGACTTCAGGCGCGTCGCTGACTTCCTGAAAGACAAggttCCTGGTATCACCATCGCAACGGACATCATCTGTGGTTTCCCAGGGGAGACGGATGCTGACTTCCAGGAGACATGTGACCTGGTGAAGGAGTATCGCTTCCCCAGCCTCTTCATCAACCAGTTCTACCCCCGGCCTGGCACCCCCGCCGCCAAGATGACCCAGGTCCCCGCCCAAGTGAAAAAACAACGGACCAAAGAGCTGTCGACCCTGTTCCACTCCTATAACCCCTACCACCACAAGATTGGGGAGACCCAGCTGGTGCTTGTGACTGAGGAGTCCTTTGACTCCCAGTACTATGTGGCTCACAACAAATACTATGAGCAGGTGCTGGTGCCCAAGAGGTCAGAGTTCAAGGGGAAGATGATTGAGGTGGAGATCTTCGAGGCCGGCAAACACTTCCTGAAGGGAAGACCGCTGGATGGCTCCGAAGTGTTCACTCCCTCCATCGCCGAGCCACTGCAGCAGGGGGAGGTGTCTGGGCTCAGTCAGGAGCAGCTGTCCCTCCAGCAGAATGGGTCCGTCCCCTCCTCAGGCGTGCTGACTGTATCCTGGAGCCCCTGGAGCCTGGACAGAGAGGGGCTGAAGCTGCTGTCTATCGGCCTGGCTGTGGTGGCTATCCTAGTGGTCTTCATGTGGGAGAAACTCCACTGAGACCGAGGAGCTGGAAGACATGGacctgggcctgtattcatagaGCGTCTCGGAGGAGGAGTGCTGATCCAACATCAGGGCCCCCTCTTTTACAATCATCCTTATATTCtacaaggcaaaactgatcctagatcagcattcatACACCGAGACTCTTTATGAATAAGGGACCTGGATCAAATAAATATGGAAATGATTTCCAAGTACTTTGTACTGGGCAAACTAAATCAAGCCTAGCTCGAGTATTTGAAAGAGTTTGACATGTTTATTTGGCCTATAGGTTTGGTTGAAATGGGTTTTGGATGGGTCCTAGTTTAGCTTTATATGAGGAAAAAAACTTCCCAGTCTTGGACAAAGACTGATGGATTCTGGAGCTGCATGTGAGAGTTAGGAAGAGGAGACGAGGGTAGGAAACAAGGAcaggagataaggagaggacaGGTTAAAGACACGTTGTGTGATACTCTGGTTTAAGATGGTGGATATCTTTAattaaaagtatttatttttaccAACAAtgaaacagacacagaggaacAGGTATATTTTTGGTAATGAATTTACATCACAGTAAAAGccacactctctgtgtctgtcgtACTGTCATACCACATTGTGATTGTTTACCaaaacatttgttgttgttttttcctctcgtgtttctctatttgtatttctgtttttatggtTTTCCATTTGAACGTCAGTCTACTACTGAGTAGACGGAGACCCCTTTGTGCCCTGGTATGAAGTAgttagagaacagggtgccatttgggatgctgtgaTGTTACGGTGTGAAACTGCATGTTGTTTGGATTCTATTCATGTACATCTCAGCAGTAGATCATCTCCTATCCCAGGGGACTTATTGTCTGGTCTAGATCCCTGTCtgcctctcaaatggcaccctattccctttatagtgcactactttccaccaggactggcaccctattccctatatagtgcactacttttcaccaggaccctatggggggggggggggggggggtctggccaaaggtagtgcactatatagagaatagagtgtAATTTGAAACACAGACttgacagtgttttctcatcttTGTTTGCAGTGTAAAGCTAACCTTAATAAACCTTAATAAACCAAAACTCCATgc

Function

NR:

description
CDK5 regulatory subunit-associated protein 1-like 1

GO:

id name namespace
GO:0009451 RNA modification biological_process
GO:0016740 transferase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935222.1 False 2933 mRNA 0.50 15 2644890 3390745
XM_036935217.1 True 3072 mRNA 0.50 15 2644890 3391012

Neighbor

gene id symbol gene type direction distance location
LOC110511524 NA coding downstream 108728 2533802 ~ 2536162 (-)
LOC110514306 NA coding downstream 125868 2518187 ~ 2519022 (-)
LOC110512766 LOC106593784 coding downstream 128471 2513710 ~ 2516419 (-)
sox4b sox4 coding downstream 195129 2446374 ~ 2449761 (-)
LOC118937335 NA coding downstream 204588 2273420 ~ 2440302 (-)
LOC118937342 e2f3 coding upstream 1634 3392063 ~ 3405112 (-)
LOC118944031 NA coding upstream 50074 3441086 ~ 3443541 (-)
LOC110514058 LOC105007466 coding upstream 56145 3447157 ~ 3520769 (-)
LOC110512975 LOC105909030 coding upstream 136358 3527370 ~ 3663403 (-)
LOC118937345 NA coding upstream 224071 3615083 ~ 3619295 (-)
G106921 NA non-coding downstream 6434 2637643 ~ 2638456 (-)
G106917 NA non-coding downstream 11248 2632698 ~ 2633642 (-)
G106896 NA non-coding downstream 54863 2589768 ~ 2590027 (-)
G106895 NA non-coding downstream 55148 2589515 ~ 2589742 (-)
G106893 NA non-coding downstream 58709 2585882 ~ 2586181 (-)
G107261 NA non-coding upstream 23330 3414342 ~ 3415480 (-)
G107270 NA non-coding upstream 40914 3431926 ~ 3433121 (-)
G107282 NA non-coding upstream 64411 3455423 ~ 3456292 (-)
G107303 NA non-coding upstream 113969 3504981 ~ 3506013 (-)
G106003 NA other downstream 159767 2483860 ~ 2485123 (-)
G106001 NA other downstream 161534 2482941 ~ 2483356 (-)
G105938 NA other downstream 281359 2362999 ~ 2363531 (-)
G105636 NA other downstream 524389 2118079 ~ 2120501 (-)
G105492 NA other downstream 683303 1958484 ~ 1961587 (-)
LOC110506994 carmil1 other upstream 361549 3705036 ~ 3924570 (-)
G107456 NA other upstream 600314 3991326 ~ 3992847 (-)
G107574 NA other upstream 904413 4295425 ~ 4296815 (-)
G107576 NA other upstream 906433 4297445 ~ 4302456 (-)
G107755 NA other upstream 984910 4375922 ~ 4376423 (-)

Expression


Co-expression Network