LOC118937343


Basic Information

Item Value
gene id LOC118937343
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3641294 ~ 3643287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034612.1
GATAACactaggttatagtagtagagtcagagagataacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagataACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtaACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtc
>XR_005034615.1
GATAACactaggttatagtagtagagtcagagagataacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagataACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagagGTAACactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtaACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtc
>XR_005034613.1
GATAACactaggttatagtagtagagtcagagagataacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagataACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtaACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagaga
>XR_005034614.1
GATAACactaggttatagtagtagagtcagagagataacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagataACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagagGTAACactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtaACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagaga
>XR_005034616.1
GATAACactaggttatagtagtagagtcagagagataacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggtatcactaggttatagtagtagagtcagagagataACACTAGGTTATAGTAGTAGTCAGAGAGGTATCactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagagGTAACactaggttatagtagtagagtcagagaggtaacactaggttatagtagtagagtcagagaggta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034612.1 False 585 mRNA 0.39 7 3641294 3643287
XR_005034615.1 False 519 mRNA 0.39 6 3641294 3643287
XR_005034613.1 False 524 mRNA 0.39 5 3641692 3643287
XR_005034614.1 False 458 mRNA 0.39 4 3641692 3643287
XR_005034616.1 True 365 mRNA 0.39 4 3642104 3643287

Neighbor

gene id symbol gene type direction distance location
LOC118937344 NA coding downstream 3598 3635646 ~ 3637696 (-)
LOC118937345 NA coding downstream 23201 3615083 ~ 3619295 (-)
LOC110514058 LOC105007466 coding downstream 120525 3447157 ~ 3520769 (-)
LOC118944031 NA coding downstream 197753 3441086 ~ 3443541 (-)
LOC118937342 e2f3 coding downstream 236182 3392063 ~ 3405112 (-)
LOC110505062 LOC106572986 coding upstream 32978 3676265 ~ 3701014 (-)
LOC110506994 carmil1 coding upstream 61749 3705036 ~ 3924570 (-)
LOC110506163 LOC106574253 coding upstream 287347 3930634 ~ 3933620 (-)
LOC110520706 LOC106574239 coding upstream 297103 3940390 ~ 3987636 (-)
enpp2 LOC106573026 coding upstream 479023 4122310 ~ 4167024 (-)
G107323 NA non-coding downstream 48105 3591987 ~ 3593189 (-)
G107316 NA non-coding downstream 68664 3569469 ~ 3572630 (-)
G107315 NA non-coding downstream 74649 3566272 ~ 3566645 (-)
G107254 NA non-coding downstream 114491 3524614 ~ 3526803 (-)
G107342 NA non-coding upstream 43335 3686622 ~ 3686950 (-)
G107357 NA non-coding upstream 85209 3728496 ~ 3730386 (-)
G107359 NA non-coding upstream 92992 3736279 ~ 3737983 (-)
G107362 NA non-coding upstream 111861 3755148 ~ 3755566 (-)
G106003 NA other downstream 1156171 2483860 ~ 2485123 (-)
G106001 NA other downstream 1157938 2482941 ~ 2483356 (-)
G105938 NA other downstream 1277763 2362999 ~ 2363531 (-)
G105636 NA other downstream 1520793 2118079 ~ 2120501 (-)
G105492 NA other downstream 1679707 1958484 ~ 1961587 (-)
G107456 NA other upstream 348039 3991326 ~ 3992847 (-)
G107574 NA other upstream 652138 4295425 ~ 4296815 (-)
G107576 NA other upstream 654158 4297445 ~ 4302456 (-)
G107755 NA other upstream 732635 4375922 ~ 4376423 (-)

Expression


Co-expression Network