colec10 (LOC106591867)


Basic Information

Item Value
gene id colec10
gene name LOC106591867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4050783 ~ 4065607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935433.1
CTGTATGGTCCTTGTGCTGTATTGAATCCTCATACTAAAGGACATGAAACATCACGACTTCAGCAGGAGGCTACTGGTGCTCTCTGTCCTTTCAACTATCTTTGATTCTCTTAATGCGGTCGAAGTCTGTTCCAACACTATTCTGCCAGGATCTAAAGGAGACCTGGGTGAAGGGGGAGGCGAGGGAGACCAGGGACGGCTGGGAAAGACCGGTCCACCAGGACTACTAGGTCTGACAGGGGAGCTCGGAGATAAAGGAGAGCAGGGCCGGACGGGGAAGATGGGTCCTGCTGGAGACAAAGGAGACGCAGGAGATGCAGGAGTTGATGGACCCTCTGGAATGAAAGGGAAAGCAGGGGCAACATGTGACTGTGGGAGGTACAGGAAGGTCGTTGGACAGATGGACATCAATATCAGAAAGCTGAAGAATGCAGTCAAGTTTGTGAAAAATGTCATTTTAGGCATTAAGGAAACGGAGGAGAAATTTTACCTGATTGTGAAAGAGGCCAGAAAGTACCGAGAGGCTCTGATAAACTGTAAGCTGAGGGGCGGTATGCTCGCCATGCCCAAAACAACAGACACCAACACCCTGATTGCAGACTACGTCGCCCAGGCCGGCCTTACCCAGGTCTTCATCGGGCTGCAGGCTGGGCAGAAGGGTGGAGGGCCTGTTTACGCAGACCTGACCCCAGTGAGGAACTATACAGCCTGGGGCCTAGAGGAGCCATCAGGGGCCCCTTCCAACACCAGCTGTGTGAAGATGGTCACCACAGGCACCTGGAACCAGGTGGAGTGTGACATCACCATGTACTACGTGTGCGAGTTCGAGAAGAGCAGGAGAGGTCTCGCCGCCGTGCTGTGATGTCATCAAGTCGGTGGAAGGTTGTTGACGTGGACATTAGACCTTTATGCTAATACAGAAACCAGTAGTACATTAACCTATAGTTAAACATGTAGCCTTATAGTAACTAGACAAAGGTCATTGATATAACCTAGCCTATTGATTTTAATGAGAGATAAAAGTTGGTATCCatgggggcctcccgagtggcgcagcggtctaaggcactgcgtcgcagtgctagaggtgtcactacagacccgggtttgatcccgggctgtatcacaaccggccgtgaccgggagtcccatagggcagttcacaattggcccagtgtcgtccgggttagaggagggtttggccatgGGGCtatacttggctcatcgcgctctagcgccTCCTTGTGGCGGGCCCGGGCGCAAGTAGACTGACCTCGGGTtttcagttgaacggtgttttctgcgacacattggtgcagctgacttctgggttaagtgggcgggtgttaagaagaagcgtggtttggcaggtcatgtttcagaggacgcatgactcgaccttcgcctcccgagcccgttggggagttgcagtgatgagacaagattcaaattggggagaaaatgttttttgttgttttttttaaagttggTATCCCTTTTGACACTTAAGCCtttagttttttggggggatagCATATAAAAACCTTTCCCTTTCTGTAATAAAACACCATACAAATCAA

Function

NR:

description
collectin-10-like

GO: NA

KEGG:

id description
K10065 COLEC10; collectin sub-family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935433.1 True 1580 mRNA 0.51 7 4050783 4065607

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 628684 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 1070590 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 1072259 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1630162 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1872787 2166121 ~ 2177996 (+)
mal2 mal2 coding downstream 385 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 47515 4113122 ~ 4119742 (+)
deptor deptor coding downstream 171273 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 262376 4327983 ~ 4572381 (+)
LOC110520696 mtbp coding downstream 537351 4602958 ~ 4654733 (+)
G106790 NA non-coding upstream 3159 4046707 ~ 4047624 (+)
G106773 NA non-coding upstream 24931 4025592 ~ 4025852 (+)
G106764 NA non-coding upstream 38244 4012139 ~ 4012539 (+)
G106761 NA non-coding upstream 42360 4007937 ~ 4008423 (+)
G106755 NA non-coding upstream 57173 3993333 ~ 3993610 (+)
G106795 NA non-coding downstream 11671 4077278 ~ 4083492 (+)
G106797 NA non-coding downstream 30089 4095696 ~ 4096869 (+)
G106814 NA non-coding downstream 72206 4137813 ~ 4138496 (+)
G106831 NA non-coding downstream 102113 4167720 ~ 4168317 (+)
G106806 NA non-coding downstream 121211 4186818 ~ 4189033 (+)
G106775 NA other upstream 23189 4027075 ~ 4027594 (+)
G106575 NA other upstream 250431 3639434 ~ 3800352 (+)
G106595 NA other upstream 372933 3676265 ~ 3677850 (+)
G106253 cdkal other upstream 659750 3006312 ~ 3391033 (+)
G107922 NA other downstream 678561 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 743132 4808739 ~ 4811575 (+)
G108048 NA other downstream 792304 4857911 ~ 4858274 (+)
G108280 NA other downstream 1070749 5136356 ~ 5136992 (+)

Expression


Co-expression Network