LOC110506140 (LOC106606110)


Basic Information

Item Value
gene id LOC110506140
gene name LOC106606110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5148101 ~ 5176987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034658.1
ATACGTACGCTGACGTAGTTGATCACGTGGTTTTTGGCGTAGATCCCCCTGCGAACGCCGATTTTTTCCGGCTGTTGTCTGGCGGATTCGGTCGAATCTGTAGAATAAATCGTCGTATTCGGTTGTTATCGTGTTGTAAGACCCGTTTTGGACCCCGTTTAACGGTGCTCGGCATTACAGCGCATCATACGCGGTAGACAGattGGGTGATCTGGGATGAAGTCTCATGAATTCCCTCATTGGAGCTGACATTAACAGTCAGCAGGAACAAGTGCATATTCTTCACAAGACAGAAACATCCCATCGTTTCCCCTCTACAACGTCCGTCTAACAGTCCCAGGGGACGTACGCACGCCATGGCCAGCCGGAGGAAGACCACGACCCCTTGTAGAGCTGATGCTGTTTTTCGAGGTGATGACATGATGGGGCAAGAGGATCCAGGTGAGATGGAGGTGGAGGTATCGGCGAATGACAAAAGCACAGTGGTGAATGGATCCACAGAGATGCTTCCTGGAGAGGACTGGAGCTCCGGGACAGAGCCTAGTGGTTCACGTCAGGAGTCGCTGGCCCCTCAGAAACCTAATGCGGTGGATTCAAGGCCTCAGAGGAAGCAGCAGGGAGGCTATGAATGCAAGTACTGTCCGTTCTCTACCCAGAACCTGAATGAGTTCAAGGAACACGTGGACTCCAATCACCCCAATGTCATTCTCAACCCGCTCTACCTGTGTGCTGTGTGCAACTTCAACACAAAGAAGTTTGACACCTTGACAGAGCACAACGAGAGGTGTCATCCGGGGGAGAGCAACTTCAAGTTCAAGAGAATCAAGCTGAACAATCAGACCATCCTAGAGCAGTCGATAGAAGGAGCGAGCAACGCTGTGGTCTGTGATTCAACCAACGGCATTCAGACAGGAGAAGACTTCGCCACTTTCCCCCTGAGCAAATCCACCACAGTGAAGATTAGTAAGCCAAAAACAGACAACAAACGGTTATTCACAGAAAGTCAACCGGACAGACTCGACCACGAGCTCCCCAGAAAGCAGATCGCCGCCGTGAATGTGACCGGGACCGTGATCATCCCAGAAGCGTCCCTAAAAGATGGCGTCTCTCATATCATGCCTTCTCTTCAGCGCCCGCCTAACTACAACTTAGTACCAAAAATCGCTGTCCCTTTGAACACCTCCAAGTACAACCCTTCACTGGACAGTAACATGACACTCATCACATCCTTCACCAAGTTCCCGTACCCGACCCAGGCGGAGCTGTCCTGGCTTACCGTTGCCTCCAAGCACCCCGAGGAACAGATCAAGGTGTGGTTCACCCTCCAGAGACTGAAGCAAGGCATCAGCTGGTCCCCTGAAGAGGTGGAAGAAGCTCGGAAGAAGATGTTCAACGGCACCATCCAGTCGGTCCCACAGACCACCTTCACCGTGCTGAGCGGCGCCCAGATGGCTCAGTCCACcaaaggacaacagtctctagtTCAATCCGTCCCCTTCAACCTCCTGGGACAGACCAGTTATGTGTTGACGCCGGTTGCGAACGGCTCAGCTGTCAGTTGTTCTCCCATCACACTAACCATGGCAAACCAGGTCGTGCAGTCAGTCAAGCGACCCTTGGTAGCTCCAGTAGTGGCCGCTTCAGAGATCAAACGTCCCTCCATAATCCAGACGATTCAGGCACCTACATCTAGACTGGTGGCTTCGCCTAAACCTAGCTTCACTTCAGACGCTAATAAAACCCCGGACCAGATTGCTGTACTGAAAGCGAGTTACACCCAGTGCCAGTTCCCTGAAGAGGAGGAAGTGTACCGCCTCATTGAGTCCACCGGCCTCTCTAGAGGAGAAATCAAGAAGTGGTTCAGTGAGCAACGACTCCTCAATCACAAGGTGGCGCCACAGGTGATCAAGATTGAGCCCCAGGCATTGAAAGACAGTCAGCCCAAAAAGGCTGTGCCCACCCAGTTTCCTCTCCTGGAGAGGCTCAAAGGCAAATCCTCTGAGCAGCTCAAGATGCTAGAGGAGAGTTTTCAGAGGACCAGCTCCCCCACTGAAATTGACATTGACAACCTCGTTGTGGACACAAGGCTCTCCAAGACTGAGATCGACTGCTGGTTCTCAGAGCGCAGAGCACTGCGGGACAACTTGGAGCAAGCCCTGGCAAACTCCATGTGTCCGAAGAGCCTTGAGGAGCAACGAGGGATACTGAACAGTGTTTACGAACAGGACAGCAAAGTCCGGTGCTCACCTCTTCCCATCGTCACCACTTCCACCAGTCCTGAGCCCATCGACAGGAAATCCCTAGGGCTTCTCAAAGAGGTGTTCACCCAGACCCAGTGGCCGTCGCCAGAAGAGTACAGCCAGCTGGAGGGACAGACAGGTTTGTCTCGCACAGAGATTGTCCGCTGGTTCAAGGAAAACCGATCCGCCCTGAAGAACGGAACCTTGGACTGGATGGAACAGTTCCAGAAAGTCAACGGCAAAGCAGGACAGAACGGTCAGAGCTCGTCAGGCATCACCGAACGACCCCCAAGCAGCATTCTCCAGCAGCACTTCACGGAAGCCAAGACCACGCTGCTTTCAGCAGAGGACGCAGAGAAGCTTCCTTTGCAGTCGAAACTCATCAACCAGGACATAGTCCAGTGGTTTACCAGTAAGCTGGGCCAGAGTATGACAGACATCAGCAGGGGCAGGGACCAACATGGACAGGCCAACGTGGACAGAAGCAGATGGGTGAAGGTGACCATGGCTGTAGGGGACGAGACTAAAGGTGCTTTGGAGAACCAGAAGATCGGCTCGGAAGCAGAGGTGCTGATGGGAGACCAACCTGGTCGGGTGACTGGATGAGAAGAGCATGAGCGATGGCTAGCAACAATCTAGCAGCTGTGGCTTTGAACCACGCGGGATGCCTGTAATTTAGCCTTCAGAAAAACATCTTGGCAGGAAGAGGCTATTGAGATTATACACATGTGGTTATCACTGGGGATTTTCCCCCCCTGGTGAACAGAAAAGCACCTCTGATAGCCTGCTGTATGGAGGATACTGAGTTTCTCAGGCAGAAGATTCTCAAGATTGTTGAATTCTGGAACCAATGATTTCCTACCTGGCCTGTGACATCAGCACAGTGGACAGTAGAGTCCACGCCAAACACCGACTGGCAAAGACCATTGAGTGCCAAAGCTGGACTtgatgcattattattattattattattattattattattatcattacacttaataaataaaaaaagggcCCTTGTAAATATTTTTCTGTATTGCAAAAGCTTTGTAAACATTTTGGGGGTTGCTGGTTTTTACATTTCTAACAGGAGTCAATAACCCCTAAAAGAGGAATGTTTTGGTTTTTAATGACTGTGATGGAAATTGTAAACCAATTCATCAGTTGGTAATTCTTTTCTTTTTAACAAAACATTTAGTGACCGACAGCTGGTCATAGATGGCACTTATTTCAAGTGGATAGACTAGTAACACTTCTGATCTGATAACCAGTGTGTTCATCCATTTGGACTAAAGGGACTAGTGGTTCTCTACCAGACCATAGAATCACCTAGCCTGGGTTCCAGGAGTGGAATGATGGCACAAAACAGGTCTGCTACCCAGGCTAAGAATCACATACTTACATTACAATAACAGTTCTCCCTTCAGCATTCATGCTGAATGCTCCTGCTGCCTGAGACGACAGTCAGCCACAGAATGGacattaatacattttttaaaaacaagaaaatgcactgtacatgttttTTGTAGTTCAGTCTCATTTTTGAATTGCAGCGTCCGTTGCATCAGTGACTGGTCTTTTCTCGTGTTGGCTTTCTAGATATCCATAGATATCCTAGGTGTAGTTAGGCTCCATTTTTCAATGGCTCGCTCCTTCAGTTTCATGCTGCTTCTATTAGTGAATCATGTTCACACATGTATCTGGAATACTGTACTGCTACCAAGAATCTCTTTACTTCCtggtttgttttttatttatccgtCTGCTGTAACTCAATAAAACACAACCAACTGAA
>XM_036935645.1
TACGCTGACGTAGTTGATCACGTGGTTTTTGGCGTAGATCCCCCTGCGAACGCCGATTTTTTCCGGCTGTTGTCTGGCGGATTCGGTCGAATCTGTAGAATAAATCGTCGTATTCGGTTGTTATCGTGTTGTAAGACCCGTTTTGGACCCCGTTTAACGGTGCTCGGCATTACAGCGCATCATACGCGGTAGACAGattGGGTGATCTGGGATGAAGTCTCATGAATTCCCTCATTGGAGCTGACATTAACAGTCAGCAGGAACAAGTGCATATTCTTCACAAGACAGAAACATCCCATCGTTTCCCCTCTACAACGTCCGTCTAACAGTCCCAGGGGACGTACGCACGCCATGGCCAGCCGGAGGAAGACCACGACCCCTTGTAGAGCTGATGCTGTTTTTCGAGGTGATGACATGATGGGGCAAGAGGATCCAGGTGAGATGGAGGTGGAGGTATCGGCGAATGACAAAAGCACAGTGGTGAATGGATCCACAGAGATGCTTCCTGGAGAGGACTGGAGCTCCGGGACAGAGCCTAGTGGTTCACGTCAGGAGTCGCTGGCCCCTCAGAAACCTAATGCGGTGGATTCAAGGCCTCAGAGGAAGCAGCAGGGAGGCTATGAATGCAAGTACTGTCCGTTCTCTACCCAGAACCTGAATGAGTTCAAGGAACACGTGGACTCCAATCACCCCAATGTCATTCTCAACCCGCTCTACCTGTGTGCTGTGTGCAACTTCAACACAAAGAAGTTTGACACCTTGACAGAGCACAACGAGAGGTGTCATCCGGGGGAGAGCAACTTCAAGTTCAAGAGAATCAAGCTGAACAATCAGACCATCCTAGAGCAGTCGATAGAAGGAGCGAGCAACGCTGTGGTCTGTGATTCAACCAACGGCATTCAGACAGGAGAAGACTTCGCCACTTTCCCCCTGAGCAAATCCACCACAGTGAAGATTAGTAAGCCAAAAACAGACAACAAACGGTTATTCACAGAAAGTCAACCGGACAGACTCGACCACGAGCTCCCCAGAAAGCAGATCGCCGCCGTGAATGTGACCGGGACCGTGATCATCCCAGAAGCGTCCCTAAAAGATGGCGTCTCTCATATCATGCCTTCTCTTCAGCGCCCGCCTAACTACAACTTAGTACCAAAAATCGCTGTCCCTTTGAACACCTCCAAGTACAACCCTTCACTGGACAGTAACATGACACTCATCACATCCTTCACCAAGTTCCCGTACCCGACCCAGGCGGAGCTGTCCTGGCTTACCGTTGCCTCCAAGCACCCCGAGGAACAGATCAAGGTGTGGTTCACCCTCCAGAGACTGAAGCAAGGCATCAGCTGGTCCCCTGAAGAGGTGGAAGAAGCTCGGAAGAAGATGTTCAACGGCACCATCCAGTCGGTCCCACAGACCACCTTCACCGTGCTGAGCGGCGCCCAGATGGCTCAGTCCACcaaaggacaacagtctctagtTCAATCCGTCCCCTTCAACCTCCTGGGACAGACCAGTTATGTGTTGACGCCGGTTGCGAACGGCTCAGCTGTCAGTTGTTCTCCCATCACACTAACCATGGCAAACCAGGTCGTGCAGTCAGTCAAGCGACCCTTGGTAGCTCCAGTAGTGGCCGCTTCAGAGATCAAACGTCCCTCCATAATCCAGACGATTCAGGCACCTACATCTAGACTGGTGGCTTCGCCTAAACCTAGCTTCACTTCAGACGCTAATAAAACCCCGGACCAGATTGCTGTACTGAAAGCGAGTTACACCCAGTGCCAGTTCCCTGAAGAGGAGGAAGTGTACCGCCTCATTGAGTCCACCGGCCTCTCTAGAGGAGAAATCAAGAAGTGGTTCAGTGAGCAACGACTCCTCAATCACAAGGTGGCGCCACAGGTGATCAAGATTGAGCCCCAGGCATTGAAAGACAGTCAGCCCAAAAAGGCTGTGCCCACCCAGTTTCCTCTCCTGGAGAGGCTCAAAGGCAAATCCTCTGAGCAGCTCAAGATGCTAGAGGAGAGTTTTCAGAGGACCAGCTCCCCCACTGAAATTGACATTGACAACCTCGTTGTGGACACAAGGCTCTCCAAGACTGAGATCGACTGCTGGTTCTCAGAGCGCAGAGCACTGCGGGACAACTTGGAGCAAGCCCTGGCAAACTCCATGTGTCCGAAGAGCCTTGAGGAGCAACGAGGGATACTGAACAGTGTTTACGAACAGGACAGCAAAGTCCGGTGCTCACCTCTTCCCATCGTCACCACTTCCACCAGTCCTGAGCCCATCGACAGGAAATCCCTAGGGCTTCTCAAAGAGGTGTTCACCCAGACCCAGTGGCCGTCGCCAGAAGAGTACAGCCAGCTGGAGGGACAGACAGGTTTGTCTCGCACAGAGATTGTCCGCTGGTTCAAGGAAAACCGATCCGCCCTGAAGAACGGAACCTTGGACTGGATGGAACAGTTCCAGAAAGTCAACGGCAAAGCAGGACAGAACGGTCAGAGCTCGTCAGGCATCACCGAACGACCCCCAAGCAGCATTCTCCAGCAGCACTTCACGGAAGCCAAGACCACGCTGCTTTCAGCAGAGGACGCAGAGAAGCTTCCTTTGCAGTCGAAACTCATCAACCAGGACATAGTCCAGTGGTTTACCAGTAAGCTGGGCCAGAGTATGACAGACATCAGCAGGGGCAGGGACCAACATGGACAGGCCAACGTGGACAGAAGCAGATGGGTGAAGGTGACCATGGCTGTAGGGGACGAGACTAAAGGTGCTTTGGAGAACCAGAAGATCGGCTCGGAAGCAGAGGTGCTGATGGGAGACCAACCTGGTCGGGTGACTGGATGAGAAGAGCATGAGGATACTGAGTTTCTCAGGCAGAAGATTCTCAAGATTGTTGAATTCTGGAACCAATGATTTCCTACCTGGCCTGTGACATCAGCACAGTGGACAGTAGAGTCCACGCCAAACACCGACTGGCAAAGACCATTGAGTGCCAAAGCTGGACTtgatgcattattattattattattattattattattattatcattacacttaataaataaaaaaagggcCCTTGTAAATATTTTTCTGTATTGCAAAAGCTTTGTAAACATTTTGGGGGTTGCTGGTTTTTACATTTCTAACAGGAGTCAATAACCCCTAAAAGAGGAATGTTTTGGTTTTTAATGACTGTGATGGAAATTGTAAACCAATTCATCAGTTGGTAATTCTTTTCTTTTTAACAAAACATTTAGTGACCGACAGCTGGTCATAGATGGCACTTATTTCAAGTGGATAGACTAGTAACACTTCTGATCTGATAACCAGTGTGTTCATCCATTTGGACTAAAGGGACTAGTGGTTCTCTACCAGACCATAGAATCACCTAGCCTGGGTTCCAGGAGTGGAATGATGGCACAAAACAGGTCTGCTACCCAGGCTAAGAATCACATACTTACATTACAATAACAGTTCTCCCTTCAGCATTCATGCTGAATGCTCCTGCTGCCTGAGACGACAGTCAGCCACAGAATGGacattaatacattttttaaaaacaagaaaatgcactgtacatgttttTTGTAGTTCAGTCTCATTTTTGAATTGCAGCGTCCGTTGCATCAGTGACTGGTCTTTTCTCGTGTTGGCTTTCTAGATATCCATAGATATCCTAGGTGTAGTTAGGCTCCATTTTTCAATGGCTCGCTCCTTCAGTTTCATGCTGCTTCTATTAGTGAATCATGTTCACACATGTATCTGGAATACTGTACTGCTACCAAGAATCTCTTTACTTCCtggtttgttttttatttatccgtCTGCTGTAACTCAATAAAACACAACCAACTGAA

Function

NR:

description
zinc fingers and homeoboxes protein 2-like isoform X1

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24880 ZHX2; zinc fingers and homeoboxes protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034658.1 False 4038 mRNA 0.49 4 5148101 5176987
XM_036935645.1 True 3854 mRNA 0.49 3 5148106 5176987

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 410817 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 493368 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 511963 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 575720 4327983 ~ 4572381 (+)
deptor deptor coding upstream 845565 4236880 ~ 4302536 (+)
tbc1d31 tbc1d31 coding downstream 18944 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 51070 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 97169 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 106707 5283628 ~ 5285741 (+)
ccdc127a cc127 coding downstream 129289 5306276 ~ 5310035 (+)
G108281 NA non-coding upstream 9743 5137664 ~ 5138358 (+)
G108262 NA non-coding upstream 49215 5097542 ~ 5098886 (+)
G108261 NA non-coding upstream 51006 5096781 ~ 5097095 (+)
G108241 NA non-coding upstream 66467 5079374 ~ 5081634 (+)
G108233 NA non-coding upstream 94084 5053050 ~ 5054017 (+)
G108252 NA non-coding downstream 14590 5191577 ~ 5192957 (+)
G108323 NA non-coding downstream 29578 5206565 ~ 5207066 (+)
G108326 NA non-coding downstream 32793 5209780 ~ 5210360 (+)
G108330 NA non-coding downstream 44881 5221868 ~ 5222697 (+)
G108331 NA non-coding downstream 46620 5223607 ~ 5224256 (+)
G108280 NA other upstream 11109 5136356 ~ 5136992 (+)
G108048 NA other upstream 289827 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 336526 4808739 ~ 4811575 (+)
G107922 NA other upstream 402515 4744168 ~ 4745586 (+)
G106814 NA other upstream 1009605 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 119192 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 329559 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 404306 5575366 ~ 5592253 (+)
G108682 NA other downstream 542978 5719965 ~ 5725579 (+)
G108702 NA other downstream 603227 5780214 ~ 5782921 (+)

Expression


Co-expression Network