LOC110520809 (LOC106598492)


Basic Information

Item Value
gene id LOC110520809
gene name LOC106598492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5228057 ~ 5235894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935668.1
aacttgacacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgcttgagacacagtgagagagagtgatagactCACATTGCAGGGACAAGTCTGTGAAGAATGCAGTCAGGTGTTATCAGTCTCCACTGAGCTGATCAGACAGTCATGTTCACCTCTGTCACTCAACTAGACTTCTCTCTCCCACTAAGGGAGGGAGTGCTTTAAACAGCAGGTCTCTGTCACGCTCTCACTCCCACAACAGCTCACCTGTCCCCCCCAGCACACTGCAACCCACAGGTGGAATGTCCTCATAGAAATAACAATACTAGACCGggcatccccattcaagtcaatgtaaTTCTACTTCTATGGGTGTAGCCAACTGTACAATTGATTGAGGGGGGCAGGTCTCAGAAACCTCACGGCTGCTACTCCATCCCGGTCTGTGTCTCCGCGAGGGTTTTTCActcagtagcagcagtaggtaaCGACAGGTAATACGTGTTGATCAGAGAGCCTTGTACAGCTTCACTATGAACCTGCAGAGCAACGGCCTGTCTGTTCAGTGGTACCTGAAGTCCAAGCCGGTGGGGAAGGTGAGGCGGCGTGTACAGGAGATGAAAAACCCATCTGTGTCCCTGGTGTCGGGCGACGTTGACCTCAGCCACAACGAGAGCACCAGATTGGCCATGGACGCCTTGCTGAACCAGGGATTGGACATGTACCAGGAAGTACTGGCCGGAGAGGGCGAAGTGGACTTCCTGTCCAAGGAGGAGAAAGGTTATATCCTGGAGAACACTACAGACCTGAGCACCAGCAGTCTGTGTGGGACGGAGAACGACGACCAGGCAGAGGGCTCCACCACCTCTTCCCAGACAAACACCTGTTGTCCATCTGTGTTGGAGAGCGAGCCCCCTGGCTTGGACCATGGCTGGCCGGCAGAGGACTGGCGCTACCGCCTGCAGGGTGAACCCAGTGTAGAGGTCTACTTCCAGTCTGATAGAGCAGCCGGCATGAAAGACCTGCTCAGGGAGTTCATCAGCAAGGCCACAATGGTTCTGGCCATTGTAATGGACACATTCAGTGATGTGGAGATGTTCTGTGACATCCTGGAGGCAACCAGGAAGAGGAATGTGTCTGTCTACCTGCTCCTGGACCATATCAACCTGCAGGTCTTTGTCAAGATGTGTGAGACGCTACAGATCAACAGTAATCACCTCACTAACATGTCGGTCCGTAGTATACAAGGAGAGACGTATTGTGCAAAGTCTGGAAGGAAACTCACCGGACAGATCAAAGAGAAGTTCATGATCATTGACTGCACTTTAGTGCTGGCTGGATCATACAGTTTCACCTGGCTGTCCTGGCAGGTCCACAGAAGCCTGGCTGTGCTCTTCAAGGGCAGCGCGGTCAAGCCATTCGACCTGGAGTTCAGGAAGCTCTACGCCAGCTCCAAGCCTGTGCCAGCCTTCCTCACCGTGGCAACGGAGCTCAACCTTACCAGGCCGCTTATCACCCATCAAGCAGCAGCCACCTCAACCCCACTGACAAACCTTCCTTGCCCCAGTGCTGGTACCACGACCCAGAACAGATACTTCAACAACCAGGCTATGGATCAACCAACCACCACAGTTGTGCCCAGATTCAACACTCAATCTACTGTTCAACCAACTACAACCACCCAGCAaagacaccccaacactcagcCAACAGCACCACCAGCCTCCCAGCAgagacaccccaacactcagcCAACAGCACCACCAACCTCCCAGCAGAGGTACCCCAACACTCAACCAATAGCACCACCAACCTCCCATCAGAGGTACCCCAACACTCAGCCAATAGCACCACCAACCTCCCATCAGAGGTACCCCAACACTCAGCCAATAGCACCACCAACCTCCCATCAGAGGTACCCCAACACTCAGCCAACAGCACCACCAACCTCCCAGCAgagacaccccaacactcagcCAACAGCACCAACAACCTCCCGGCAgagacaccccaacactcagcCAACAACCTCCCAGCAGAGACAACCCAACACTCAGCCAACAACCTCCCAGCAgagacaccccaacactcagcCAACAGCACCAACAACCTCCCAGCAgagacaccccaacactcagcCAACAGCACCACCAACCTCCCagcagagacaccacaacactcaGCCAACAGCACCACCAACCTCCCAGTGCTTGGTGAATCAGTCTTACTACACAGGTCCCCGGAGCCACAGGTTTGACTGGATCACACAGAGACGCACTGCAACCAGGCCTGTCCTGTTCCAGAGAACCTTCTCCAGTGATTACAGTACTGGAGACAACCTGACCTGGCGACCCTTTAACAGCAATTACCTTCTTTATGGAGGGACAACCGGCTTGTTGGACAGACACCCACTTCTCAAGACTGGCCAGTGGTTTACTGTTCCTAAATAACTGAAATGGCATCATACTGAAATTTGACAGTACACCCTGTTTGAGGTAAATTATGTTCTCACAACTGAAAATGGGCAAGTAACCTTCATAGAGTAAATGTGCCTGTTTTGCTTTGCTTGATGCCTGAAATACAGGAGTAGTACTTCAATCACATCATTATCTCATAAGGATGATCATTGTCTGCCTTCAGGCTGAGAGCTTTGTGTTCCAGTACATGTTAATTCAATGGAGTAAAAACAACATGTCACAGACATGAATTCCTCTTCCACCCATCAACCCTGATAGAACCACACTGAGTGACAGCCTAGTGATGTGTGCAACGCTTAGCCAAGGGCCGGGCCTCTTAACAAACATACCTTCTGACAAATCTTCTGATCCATACACTGTCAAGCCCGAGGTAAT

Function

NR:

description
PREDICTED: protein FAM83A-like, partial

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935668.1 True 2849 mRNA 0.52 5 5228057 5235894

Neighbor

gene id symbol gene type direction distance location
tbc1d31 tbc1d31 coding upstream 1016 5195931 ~ 5227041 (+)
LOC110506140 LOC106606110 coding upstream 51070 5148101 ~ 5176987 (+)
LOC118937361 NA coding upstream 490773 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 573324 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 591919 4634503 ~ 4636138 (+)
mrpl32 LOC106595598 coding downstream 38262 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 47800 5283628 ~ 5285741 (+)
ccdc127a cc127 coding downstream 70382 5306276 ~ 5310035 (+)
phf20l1 LOC100196869 coding downstream 85660 5321554 ~ 5349672 (+)
tg LOC106573164 coding downstream 112358 5348252 ~ 5447200 (+)
G108332 NA non-coding upstream 1927 5225206 ~ 5226130 (+)
G108331 NA non-coding upstream 3801 5223607 ~ 5224256 (+)
G108330 NA non-coding upstream 5360 5221868 ~ 5222697 (+)
G108326 NA non-coding upstream 17697 5209780 ~ 5210360 (+)
G108323 NA non-coding upstream 20991 5206565 ~ 5207066 (+)
G108334 NA non-coding downstream 2333 5238227 ~ 5240350 (+)
G108336 NA non-coding downstream 4717 5240611 ~ 5241683 (+)
G108333 LOC100380869 non-coding downstream 13819 5249713 ~ 5254032 (+)
G108361 NA non-coding downstream 97859 5333753 ~ 5334485 (+)
G108280 NA other upstream 91065 5136356 ~ 5136992 (+)
G108048 NA other upstream 369783 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 416482 4808739 ~ 4811575 (+)
G107922 NA other upstream 482471 4744168 ~ 4745586 (+)
G106814 NA other upstream 1089561 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 60285 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 270652 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 345399 5575366 ~ 5592253 (+)
G108682 NA other downstream 484071 5719965 ~ 5725579 (+)
G108702 NA other downstream 544320 5780214 ~ 5782921 (+)

Expression


Co-expression Network