LOC118937366


Basic Information

Item Value
gene id LOC118937366
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5283628 ~ 5285741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034673.1
CTCCGCTCTCTGTACTTTATATCTGCTGGATTTTTTTGTGTTCTGTGGGTTCCTGCCGGTGCTAGACTAGTTGGTGGTGTTCTCTGGTTTATTACTTACCTATGTCGACTGTGCTGGTTGGCTAGCTAGGCTAGTTATCTGGCTAGGCTAGATAGACTAACTAACTCCAGCTGGCTTAAGTTAACTGCATTTACCAGTAACATTATTTAATAACTGGTTAGAGGGTGTTATGTATTTCCAAAACTTTGGTTTACTTTAATATAGCTGTAAGCTAGGTGTTGATAGCAACTGGCTGACTCATGCAATGCTAACGTAACATTAGCAGGCTGGTAGGGATAATGTTAGCAGGCTAGTTGGCTTGCAACCTCGTAAGCTGATTTGTAACAAATTCATAAAGTATTTGCTTGTAAAtgggcagatttttttattttattgaaaccAGTAGTTGTGAGTTGGAGTAacattatagggaataggctggcttGCTGGGTCCTCCATATTACATCACACCCCGTAAAAGCATTTCCCGGCATGACTTGGCATTTGACTGAATTCTAATCTATTTTATGTAATAACTCGTAAAATGGGAAAGAGAGGTGTAACTTTGCATTGGGACTTTTCATGCGTATACTAATGCaaatctgtcacaccctgatctgtttcacctgtcttgtgcttgtctccacccccctccggGTGTCGAtcattttccccattatcccctgtgcatttatacctgtggtctctgtctgttgccagtttgcctGTACTCATGTTTCTCTCTAGCCCTTGTTTTTCTGGTTTTAACCAccttgcctgccctgaccctgtcctggattactgacctctgcctgcctgccccctgttttgttAATAAACATATGTTAttcaaactgtctgcatctgggtcttattcTGAGGTCTGATACAAATCCATGACAAAGTTACTTTTTCAAATACTCCTACAGAGTTACATGCAGGTAAGACGTTCTCTTTCTGATACTACATATAAATCAGCAGGTTCTAAATAACTCTATAAAATTTGAGagatgagctcaatttcaaaaATATCACTTTTACCAAGATGAACTGCTTTTCCTTTGTCCTCCACACATGTTCATGTAGCTGCAGATCACCTACAGTAACAAACTAATGATAATGCTATTCTGTATTCTAATGTTACCCAAGACcttcagaaacacaaacaaaggatgttttttttttccgAGAGCATTTCTGAAATGTATTCTttagactgttagaatgttgcaGTAAAAACAGCATGAATCCAGCTCATTGGCGTAGTAAGGGGGGAATCGAGGCCTGGCAGTTTAAGTGTTAAAAACTGAACCCAAatcaacttaccttggctcctgcTGCTCCAGTGTTTCCTCGGGGGCCAAAGTCCCCTGCATCCCCCTGAGAGCCCTAACGAGGACATGCAGAAAACATGGACACGGATGGTGACAGGGCAGAATATTATTTTCTCATTTCATTACATCACCTGTCATAGATATCACCTGTTTAACGGTTAGTGGAACACCTCTGCTCTTACcaggtattattataattatttaggGCAGTATTCACCTGAAGTCCCGCCTCTCCACCCTCACCTGGTGGACCACGGACCCCTGGGAAACCTGGTGCCCCCTGGAactcctctcaccccctctgggCCTAGTTCTCCCTGCAAGATGCAACACAATGAATACAACCAACATCGAATCGACTATTGCGATGCAGTAAAAACAGATGAGATGTTTGATGTTTGTAGTTTGTTGGTGGAAACCTTATCTCCTCTCTTGCCAGCCTTGCCCCGTCGTCCAGCTCTGCCACTGTCTCCTCTGCTTCCCTGAAAGAGACATGTTCTCATGTTTCACCAGGACCCAAATAAAACGCGTCAGTGTAAA
>TU123089
TTTTTTCTGAAGCGCCTCTCTCCTTGGCTCTTCTTTGGTAGCTAATTCAGCCGTCAATCGGAactcctctcaccccctctgggCCTAGTTCTCCCTGCAAGATGCAACACAATGAATACAACCAACATCGAATCGACTATTGCGATGCAGTAAAAACAGATGAGATGTTTGATGTTTGTAGTTTGTTGGTGGAAACCTTATCTCCTCTCTTGCCAGCCTTGCCCCGTCGTCCAGCTCTGCCACTGTCTCCTCTGCTTCCCTGAAAGAGACATGTTCTCATGTTTCACCAGGACCCAAATAAAACG
>TU123088
GAATCGAGGCCTGGCAGTTTAAGTGTTAAAAACTGAACCCAAatcaacttaccttggctcctgcTGCTCCAGTGTTTCCTCGGGGGCCAAAGTCCCCTGCATCCCCCTGAGAGCCCTAACGAGGACATGCAGAAAACATGGACACGGATGGTGACAGGGCAGAATATTATTTTCTCATTTCATTACATCACCTGTCATAGATATCACCTGTTTAACGGTTAGTGGAACACCTCTGCTCTTACcaggtattattataattatttaggGCAGTATTCACCTGAAGTCCCGCCTCTCCACCCTCACCTGGTGGACCACGGACCCCTGGGAAACCTGGTGCCCCCTGGAactcctctcaccccctctgggCCTAGTTCTCCCTGCAAGATGCAACACAATGAATACAACCAACATCGAATCGACTATTGCGATGCAGTAAAAACAGATGAGATGTTTGATGTTTGTAGTTTGTTGGTGGAAACCTTATCTCCTCTCTTGCCAGCCTTGCCCCGTCGTCCAGCTCTGCCACTGTCTCCTCTGCTTCCCTGAAAGAGACATGTTCTCATGTTTCACCAGGACCCAAATAAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034673.1 False 1913 mRNA 0.43 2 5283694 5285741
TU123089 False 305 lncRNA 0.41 2 5283628 5285729
TU123088 True 588 lncRNA 0.40 2 5285007 5285729

Neighbor

gene id symbol gene type direction distance location
mrpl32 LOC106595598 coding upstream 8110 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 47800 5228057 ~ 5235894 (+)
tbc1d31 tbc1d31 coding upstream 56653 5195931 ~ 5227041 (+)
LOC110506140 LOC106606110 coding upstream 106707 5148101 ~ 5176987 (+)
LOC118937361 NA coding upstream 546410 4735246 ~ 4737284 (+)
ccdc127a cc127 coding downstream 20535 5306276 ~ 5310035 (+)
phf20l1 LOC100196869 coding downstream 35813 5321554 ~ 5349672 (+)
tg LOC106573164 coding downstream 62511 5348252 ~ 5447200 (+)
ccn4b wisp1 coding downstream 165758 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 195234 5480975 ~ 5542867 (+)
G108333 LOC100380869 non-coding upstream 29662 5249713 ~ 5254032 (+)
G108336 NA non-coding upstream 42011 5240611 ~ 5241683 (+)
G108334 NA non-coding upstream 43344 5238227 ~ 5240350 (+)
G108332 NA non-coding upstream 57564 5225206 ~ 5226130 (+)
G108331 NA non-coding upstream 59438 5223607 ~ 5224256 (+)
G108361 NA non-coding downstream 48012 5333753 ~ 5334485 (+)
G108529 NA non-coding downstream 80090 5365831 ~ 5366530 (+)
G108547 NA non-coding downstream 94337 5380078 ~ 5380438 (+)
G108549 NA non-coding downstream 105681 5391422 ~ 5391666 (+)
G108280 NA other upstream 146702 5136356 ~ 5136992 (+)
G108048 NA other upstream 425420 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 472119 4808739 ~ 4811575 (+)
G107922 NA other upstream 538108 4744168 ~ 4745586 (+)
G106814 NA other upstream 1145198 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 10438 5296179 ~ 5299933 (+)
LOC110506279 LOC106595015 other downstream 295552 5575366 ~ 5592253 (+)
G108682 NA other downstream 434224 5719965 ~ 5725579 (+)
G108702 NA other downstream 494473 5780214 ~ 5782921 (+)

Expression


Co-expression Network